RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MUC7Q8TAX7 377 aa9.04□□□□□ -0.96
PTPRF-202ENST00000372405 LECT2O14960 151 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 PRO0461Q9UI25 63 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 TRBV20-1A0A075B6N2 111 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 NDUFC2O95298 119 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 SYCNQ0VAF6 134 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 WFDC2Q14508 124 aa9.03□□□□□ -0.96
PTPRF-202ENST00000372405 F8WDY8 70 aa9.02□□□□□ -0.97
PTPRF-202ENST00000372405 XAGE1AQ9HD64 81 aa9.01□□□□□ -0.97
PTPRF-202ENST00000372405 CLEC2BQ92478 149 aa9.01□□□□□ -0.97
PTPRF-202ENST00000372405 NBDYA0A0U1RRE5 68 aa9□□□□□ -0.97
PTPRF-202ENST00000372405 NDUFC2-KCTD14E9PQ53 114 aa9□□□□□ -0.97
PTPRF-202ENST00000372405 F8W1H4 67 aa9□□□□□ -0.97
PTPRF-202ENST00000372405 VPS25Q9BRG1 176 aa9□□□□□ -0.97
PTPRF-202ENST00000372405 RPL28P46779 137 aaKnown RBP8.99□□□□□ -0.97
PTPRF-202ENST00000372405 PCP4P48539 62 aa8.99□□□□□ -0.97
PTPRF-202ENST00000372405 Q6ZRP5 223 aa8.99□□□□□ -0.97
PTPRF-202ENST00000372405 SMIM11BQ8TCY0 68 aa8.99□□□□□ -0.97
PTPRF-202ENST00000372405 KMT2AQ03164 3969 aa8.99□□□□□ -0.97
PTPRF-202ENST00000372405 SMCPP49901 116 aaPredicted RBP8.99□□□□□ -0.97
PTPRF-202ENST00000372405 CARD19Q96LW7 228 aa8.99□□□□□ -0.97
PTPRF-202ENST00000372405 NCR3O14931 201 aa8.98□□□□□ -0.97
PTPRF-202ENST00000372405 COX6CP09669 75 aa8.98□□□□□ -0.97
PTPRF-202ENST00000372405 OR13C6PQ8NH95 151 aa8.98□□□□□ -0.97
PTPRF-202ENST00000372405 ATXN8Q156A1 80 aa8.97□□□□□ -0.97
PTPRF-202ENST00000372405 GAGE2EQ4V326 116 aa8.97□□□□□ -0.97
PTPRF-202ENST00000372405 GAGE2DQ9UEU5 116 aa8.97□□□□□ -0.97
PTPRF-202ENST00000372405 LST1O00453 97 aa8.96□□□□□ -0.98
PTPRF-202ENST00000372405 TTC32Q5I0X7 151 aa8.95□□□□□ -0.98
PTPRF-202ENST00000372405 FAM218AQ96MZ4 157 aa8.95□□□□□ -0.98
PTPRF-202ENST00000372405 TLX1NBP0CAT3 122 aa8.95□□□□□ -0.98
PTPRF-202ENST00000372405 LINC01620Q4KN68 170 aa8.95□□□□□ -0.98
PTPRF-202ENST00000372405 C9orf129Q5T035 196 aaKnown RBP8.95□□□□□ -0.98
PTPRF-202ENST00000372405 Q6ZRN7 208 aaPredicted RBP8.95□□□□□ -0.98
PTPRF-202ENST00000372405 PSCAO43653 123 aa8.94□□□□□ -0.98
PTPRF-202ENST00000372405 VPREB1P12018 145 aa8.94□□□□□ -0.98
PTPRF-202ENST00000372405 RPL18AQ02543 176 aaKnown RBP8.94□□□□□ -0.98
PTPRF-202ENST00000372405 C9JAW5 83 aa8.93□□□□□ -0.98
PTPRF-202ENST00000372405 TMEM126AQ9H061 195 aa8.93□□□□□ -0.98
PTPRF-202ENST00000372405 M0R2N4 97 aa8.93□□□□□ -0.98
PTPRF-202ENST00000372405 DNAH2Q9P225 4427 aa8.93□□□□□ -0.98
PTPRF-202ENST00000372405 TRBV10-2A0A0K0K1G8 114 aa8.92□□□□□ -0.98
PTPRF-202ENST00000372405 IGLV6-57P01721 117 aa8.92□□□□□ -0.98
PTPRF-202ENST00000372405 LRCOL1A6NCL2 159 aa8.92□□□□□ -0.98
PTPRF-202ENST00000372405 C21orf62-AS1Q17RA5 79 aa8.92□□□□□ -0.98
PTPRF-202ENST00000372405 ETDBQ3ZM63 59 aa8.92□□□□□ -0.98
PTPRF-202ENST00000372405 SLC25A20O43772 301 aa8.91□□□□□ -0.98
PTPRF-202ENST00000372405 S100A7L2Q5SY68 101 aa8.9□□□□□ -0.98
PTPRF-202ENST00000372405 WWC2-AS2Q96NR7 200 aa8.9□□□□□ -0.98
PTPRF-202ENST00000372405 CNBPP62633 177 aaKnown RBP8.9□□□□□ -0.99
PTPRF-202ENST00000372405 Q6ZR54 194 aa8.9□□□□□ -0.99
PTPRF-202ENST00000372405 A0A087WYN8 130 aa8.89□□□□□ -0.99
PTPRF-202ENST00000372405 TRBV10-3A0A0K0K1G6 114 aa8.89□□□□□ -0.99
PTPRF-202ENST00000372405 SERTAD4-AS1Q5TG53 156 aa8.89□□□□□ -0.99
PTPRF-202ENST00000372405 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.88□□□□□ -0.99
PTPRF-202ENST00000372405 LINC01600Q96MT4 127 aa8.88□□□□□ -0.99
PTPRF-202ENST00000372405 DNAH6Q9C0G6 4158 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 FAM168BA1KXE4 195 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 H0YGX0 51 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 TRACP01848 142 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 GAGE2BQ13066 116 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 C6orf99Q4VX62 202 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 KRTAP7-1Q8IUC3 87 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 ANKRD29Q8N6D5 301 aa8.87□□□□□ -0.99
PTPRF-202ENST00000372405 J3QR89 54 aa8.86□□□□□ -0.99
PTPRF-202ENST00000372405 M0QXV9 152 aa8.86□□□□□ -0.99
PTPRF-202ENST00000372405 M0R378 163 aa8.86□□□□□ -0.99
PTPRF-202ENST00000372405 LOC107984640A0A0U1RRK4 108 aa8.86□□□□□ -0.99
PTPRF-202ENST00000372405 C14orf177Q52M58 125 aa8.86□□□□□ -0.99
PTPRF-202ENST00000372405 PLA2G2DQ9UNK4 145 aa8.85□□□□□ -0.99
PTPRF-202ENST00000372405 ALMS1Q8TCU4 4167 aa8.85□□□□□ -0.99
PTPRF-202ENST00000372405 TEN1Q86WV5 123 aa8.84□□□□□ -0.99
PTPRF-202ENST00000372405 TRAV23DV6A0A075B6W5 121 aa8.84□□□□□ -0.99
PTPRF-202ENST00000372405 A0A096LNI7 61 aa8.83□□□□□ -1
PTPRF-202ENST00000372405 H3BT86 120 aa8.83□□□□□ -1
PTPRF-202ENST00000372405 LY6G6CO95867 125 aa8.83□□□□□ -1
PTPRF-202ENST00000372405 HECTD4Q9Y4D8 3996 aa8.83□□□□□ -1
PTPRF-202ENST00000372405 C7orf33Q8WU49 177 aa8.82□□□□□ -1
PTPRF-202ENST00000372405 LINC00476Q8WZB0 136 aa8.82□□□□□ -1
PTPRF-202ENST00000372405 C22orf24Q9Y442 160 aa8.82□□□□□ -1
PTPRF-202ENST00000372405 IGLV5-37A0A075B6J1 123 aa8.82□□□□□ -1
PTPRF-202ENST00000372405 Q8N814 137 aa8.81□□□□□ -1
PTPRF-202ENST00000372405 NKAPP1Q8N9T2 125 aa8.81□□□□□ -1
PTPRF-202ENST00000372405 HYDINQ4G0P3 5121 aa8.81□□□□□ -1
PTPRF-202ENST00000372405 C16orf90A8MZG2 172 aa8.81□□□□□ -1
PTPRF-202ENST00000372405 ZNF73O43830 326 aaPredicted RBP8.81□□□□□ -1
PTPRF-202ENST00000372405 DNAH17Q9UFH2 4485 aa8.8□□□□□ -1
PTPRF-202ENST00000372405 A0A087WTM6 91 aa8.8□□□□□ -1
PTPRF-202ENST00000372405 C9orf163Q8N9P6 203 aa8.8□□□□□ -1
PTPRF-202ENST00000372405 BAALC-AS2P0C853 105 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 LINC00575Q6W349 94 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 FAM19A5Q7Z5A7 132 aaPredicted RBP8.79□□□□□ -1
PTPRF-202ENST00000372405 DIRC1Q969H9 104 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 IGKV2-24A0A0C4DH68 120 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 TEX49A0A1B0GTD5 131 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 LINC00167Q96N53 147 aa8.79□□□□□ -1
PTPRF-202ENST00000372405 C3orf84H3BNL1 204 aa8.78□□□□□ -1
PTPRF-202ENST00000372405 DNAL4O96015 105 aa8.78□□□□□ -1
PTPRF-202ENST00000372405 PPDPFLQ8WWR9 84 aa8.78□□□□□ -1
PTPRF-202ENST00000372405 FRAS1Q86XX4 4008 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms