RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GIG44P09565 113 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-201ENST00000335508 C7orf33Q8WU49 177 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 PRO0628Q9UI54 55 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 SBSPONQ8IVN8 264 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 TENM1Q9UKZ4 2725 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 HAMPP81172 84 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 WFDC10BQ8IUB3 73 aa4.78□□□□□ -1.64
SF3B1-201ENST00000335508 DHRS4-AS1Q9P1J3 65 aa4.77□□□□□ -1.65
SF3B1-201ENST00000335508 PRR4Q16378 134 aa4.77□□□□□ -1.65
SF3B1-201ENST00000335508 WWC2-AS2Q96NR7 200 aa4.77□□□□□ -1.65
SF3B1-201ENST00000335508 CELA1Q9UNI1 258 aa4.77□□□□□ -1.65
SF3B1-201ENST00000335508 ESRGQ1W209 222 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 A0A0A0MQY5 61 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 K7EIL1 84 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 ZNF73O43830 326 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-201ENST00000335508 NDUFB1O75438 58 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 LY6G6CO95867 125 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-201ENST00000335508 hADV29S1A0JD25 119 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 LST1O00453 97 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 COL6A3P12111 3177 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 SZT2Q5T011 3432 aa4.76□□□□□ -1.65
SF3B1-201ENST00000335508 RPL28P46779 137 aaKnown RBP4.75□□□□□ -1.65
SF3B1-201ENST00000335508 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.75□□□□□ -1.65
SF3B1-201ENST00000335508 EYSQ5T1H1 3165 aa4.75□□□□□ -1.65
SF3B1-201ENST00000335508 Q6ZQY7 126 aa4.75□□□□□ -1.65
SF3B1-201ENST00000335508 TM2D3Q9BRN9 247 aa4.75□□□□□ -1.65
SF3B1-201ENST00000335508 TRAV23DV6A0A075B6W5 121 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 DNAH10OSP0CZ25 163 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 NREPQ16612 68 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 REG3GQ6UW15 175 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 C1orf134Q5TEV5 83 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 TRIAP1O43715 76 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 WFDC2Q14508 124 aa4.74□□□□□ -1.65
SF3B1-201ENST00000335508 PRR34Q9NV39 138 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 LINC00526Q96FQ7 95 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 FLG2Q5D862 2391 aaPredicted RBP4.73□□□□□ -1.65
SF3B1-201ENST00000335508 PLAC8L1A1L4L8 177 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 M0R2N4 97 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 SOSTDC1Q6X4U4 206 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 Q9UF83 564 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 DMXL1Q9Y485 3027 aa4.73□□□□□ -1.65
SF3B1-201ENST00000335508 LINC00643Q86TS7 51 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 FAM19A1Q7Z5A9 133 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 TENM2Q9NT68 2774 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 NCR3O14931 201 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 FOXI1Q12951 378 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 TCL1BO95988 128 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 TSPEAR-AS2P59090 65 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 ATP5EP2Q5VTU8 51 aa4.72□□□□□ -1.65
SF3B1-201ENST00000335508 KRTAP10-3P60369 221 aa4.71□□□□□ -1.65
SF3B1-201ENST00000335508 GVQW2A0A096LPI5 108 aaPredicted RBP4.71□□□□□ -1.66
SF3B1-201ENST00000335508 COX6A2Q02221 97 aa4.71□□□□□ -1.66
SF3B1-201ENST00000335508 CLEC2BQ92478 149 aa4.71□□□□□ -1.66
SF3B1-201ENST00000335508 NBDYA0A0U1RRE5 68 aa4.71□□□□□ -1.66
SF3B1-201ENST00000335508 C3orf22Q8N5N4 141 aa4.71□□□□□ -1.66
SF3B1-201ENST00000335508 C6orf223Q8N319 242 aa4.7□□□□□ -1.66
SF3B1-201ENST00000335508 FAM19A3Q7Z5A8 133 aa4.7□□□□□ -1.66
SF3B1-201ENST00000335508 TRBV10-3A0A0K0K1G6 114 aa4.7□□□□□ -1.66
SF3B1-201ENST00000335508 C3orf84H3BNL1 204 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 LINC00588Q9Y4M8 146 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 CR1P17927 2039 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 CDH23Q9H251 3354 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 Q6ZRU5 148 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 ADAMTSL4-AS1Q5T5F5 129 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 SMIM11BQ8TCY0 68 aa4.69□□□□□ -1.66
SF3B1-201ENST00000335508 IGKV2-28A0A075B6P5 120 aa4.68□□□□□ -1.66
SF3B1-201ENST00000335508 IGKV2D-28P01615 120 aa4.68□□□□□ -1.66
SF3B1-201ENST00000335508 C9orf116Q5BN46 136 aaPredicted RBP4.68□□□□□ -1.66
SF3B1-201ENST00000335508 PRYO14603 147 aa4.68□□□□□ -1.66
SF3B1-201ENST00000335508 Q6JHZ5 121 aa4.68□□□□□ -1.66
SF3B1-201ENST00000335508 FBN2P35556 2912 aa4.67□□□□□ -1.66
SF3B1-201ENST00000335508 RPL37AP8A6NKH3 93 aa4.67□□□□□ -1.66
SF3B1-201ENST00000335508 CCKP06307 115 aa4.67□□□□□ -1.66
SF3B1-201ENST00000335508 KRTAP10-11P60412 298 aa4.67□□□□□ -1.66
SF3B1-201ENST00000335508 BPY2O14599 106 aa4.67□□□□□ -1.66
SF3B1-201ENST00000335508 IGKV3D-7A0A0C4DH55 119 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 ENHOQ6UWT2 76 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 LINC00337Q8N6G1 96 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 A0A096LNI7 61 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 A0A1B0GW54 56 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 FAM229AH3BQW9 127 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 UPK3BQ9BT76 320 aa4.66□□□□□ -1.66
SF3B1-201ENST00000335508 CD164Q04900 197 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 IGLV5-52A0A0A0MRZ9 124 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 TRBV7-6A0A0J9YX20 115 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 TEX49A0A1B0GTD5 131 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 CHKB-CPT1BH3BT56 60 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 PSPHP1O15172 72 aa4.65□□□□□ -1.66
SF3B1-201ENST00000335508 ATOX1O00244 68 aa4.65□□□□□ -1.67
SF3B1-201ENST00000335508 IMUPQ9GZP8 106 aa4.65□□□□□ -1.67
SF3B1-201ENST00000335508 C14orf132Q9NPU4 83 aa4.64□□□□□ -1.67
SF3B1-201ENST00000335508 C6orf48Q9UBA6 75 aa4.64□□□□□ -1.67
SF3B1-201ENST00000335508 KIAA0087Q14695 138 aa4.64□□□□□ -1.67
SF3B1-201ENST00000335508 MP68P56378 58 aa4.63□□□□□ -1.67
SF3B1-201ENST00000335508 PKD1L1Q8TDX9 2849 aa4.63□□□□□ -1.67
SF3B1-201ENST00000335508 C9orf163Q8N9P6 203 aa4.63□□□□□ -1.67
SF3B1-201ENST00000335508 Q8N814 137 aa4.63□□□□□ -1.67
SF3B1-201ENST00000335508 HRNRQ86YZ3 2850 aaPredicted RBP4.62□□□□□ -1.67
SF3B1-201ENST00000335508 SNURFQ9Y675 71 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms