RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 Q5VSD8 79 aa11.23□□□□□ -0.61
SSSCA1-201ENST00000309328 MIEN1Q9BRT3 115 aa11.23□□□□□ -0.61
SSSCA1-201ENST00000309328 SCGB1D4Q6XE38 83 aa11.22□□□□□ -0.61
SSSCA1-201ENST00000309328 NKAPP1Q8N9T2 125 aa11.22□□□□□ -0.61
SSSCA1-201ENST00000309328 FAT1Q14517 4588 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 LOC107984156A0A0G2JMH3 177 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 A0A0U1RRA0 63 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 TMEM238C9JI98 176 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 ARL17AQ8IVW1 177 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 COPS9Q8WXC6 57 aa11.21□□□□□ -0.61
SSSCA1-201ENST00000309328 RPL37AP61513 92 aaKnown RBP11.2□□□□□ -0.62
SSSCA1-201ENST00000309328 SERTAD4-AS1Q5TG53 156 aa11.2□□□□□ -0.62
SSSCA1-201ENST00000309328 MRPL55Q7Z7F7 128 aaKnown RBP11.2□□□□□ -0.62
SSSCA1-201ENST00000309328 C22orf24Q9Y442 160 aa11.2□□□□□ -0.62
SSSCA1-201ENST00000309328 Q6ZVH6 145 aa11.19□□□□□ -0.62
SSSCA1-201ENST00000309328 VAMP8Q9BV40 100 aa11.19□□□□□ -0.62
SSSCA1-201ENST00000309328 PHF5AQ7RTV0 110 aaKnown RBP11.18□□□□□ -0.62
SSSCA1-201ENST00000309328 KRTAP7-1Q8IUC3 87 aa11.18□□□□□ -0.62
SSSCA1-201ENST00000309328 VPREB1P12018 145 aa11.17□□□□□ -0.62
SSSCA1-201ENST00000309328 UBE2BP63146 152 aa11.17□□□□□ -0.62
SSSCA1-201ENST00000309328 PCP2Q8IVA1 136 aa11.17□□□□□ -0.62
SSSCA1-201ENST00000309328 BOD1L2Q8IYS8 172 aa11.17□□□□□ -0.62
SSSCA1-201ENST00000309328 TTTY13Q9BZ97 58 aa11.16□□□□□ -0.62
SSSCA1-201ENST00000309328 PPDPFQ9H3Y8 114 aa11.16□□□□□ -0.62
SSSCA1-201ENST00000309328 VPS13BQ7Z7G8 4022 aa11.15□□□□□ -0.62
SSSCA1-201ENST00000309328 NDUFC2O95298 119 aa11.15□□□□□ -0.62
SSSCA1-201ENST00000309328 LITAFQ99732 161 aa11.15□□□□□ -0.62
SSSCA1-201ENST00000309328 SPANXDQ9BXN6 97 aa11.15□□□□□ -0.62
SSSCA1-201ENST00000309328 SPANXCQ9NY87 97 aa11.15□□□□□ -0.62
SSSCA1-201ENST00000309328 DLEU1O43261 78 aa11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 COX8AP10176 69 aa11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 IFITM1P13164 125 aa11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 PRR3P79522 188 aaKnown RBP11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 PYY3Q5JQD4 70 aa11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 DAND5Q8N907 189 aa11.14□□□□□ -0.63
SSSCA1-201ENST00000309328 M0R378 163 aa11.13□□□□□ -0.63
SSSCA1-201ENST00000309328 SPATA45Q537H7 98 aa11.13□□□□□ -0.63
SSSCA1-201ENST00000309328 ADAMTSL4-AS1Q5T5F5 129 aa11.13□□□□□ -0.63
SSSCA1-201ENST00000309328 PAM16Q9Y3D7 125 aa11.13□□□□□ -0.63
SSSCA1-201ENST00000309328 TRBV10-2A0A0K0K1G8 114 aa11.12□□□□□ -0.63
SSSCA1-201ENST00000309328 LINC00167Q96N53 147 aa11.12□□□□□ -0.63
SSSCA1-201ENST00000309328 SPANXB1Q9NS25 103 aaPredicted RBP11.12□□□□□ -0.63
SSSCA1-201ENST00000309328 LINC00308Q8TCZ7 52 aa11.11□□□□□ -0.63
SSSCA1-201ENST00000309328 PSORS1C2Q9UIG4 136 aa11.11□□□□□ -0.63
SSSCA1-201ENST00000309328 S100A12P80511 92 aa11.1□□□□□ -0.63
SSSCA1-201ENST00000309328 KRTAP17-1Q9BYP8 105 aa11.1□□□□□ -0.63
SSSCA1-201ENST00000309328 CBY1Q9Y3M2 126 aa11.09□□□□□ -0.63
SSSCA1-201ENST00000309328 SRRM2Q9UQ35 2752 aaKnown RBP11.08□□□□□ -0.64
SSSCA1-201ENST00000309328 KRTAP10-4P60372 401 aaPredicted RBP11.08□□□□□ -0.64
SSSCA1-201ENST00000309328 SLC25A34Q6PIV7 304 aa11.08□□□□□ -0.64
SSSCA1-201ENST00000309328 IGLV1-50A0A075B6I6 118 aa11.07□□□□□ -0.64
SSSCA1-201ENST00000309328 SRSF9Q13242 221 aaKnown RBP eCLIP11.07□□□□□ -0.64
SSSCA1-201ENST00000309328 C1orf137Q5JT78 98 aa11.07□□□□□ -0.64
SSSCA1-201ENST00000309328 LINC00518Q8N0U6 118 aa11.07□□□□□ -0.64
SSSCA1-201ENST00000309328 GAGE10A6NGK3 116 aa11.06□□□□□ -0.64
SSSCA1-201ENST00000309328 SOSTDC1Q6X4U4 206 aa11.06□□□□□ -0.64
SSSCA1-201ENST00000309328 Q8NDZ9 215 aa11.06□□□□□ -0.64
SSSCA1-201ENST00000309328 RPL37AP8A6NKH3 93 aa11.05□□□□□ -0.64
SSSCA1-201ENST00000309328 NPC2P61916 151 aa11.05□□□□□ -0.64
SSSCA1-201ENST00000309328 NCR3O14931 201 aa11.04□□□□□ -0.64
SSSCA1-201ENST00000309328 C14orf144Q96I85 54 aa11.04□□□□□ -0.64
SSSCA1-201ENST00000309328 HIGD1BQ9P298 99 aa11.04□□□□□ -0.64
SSSCA1-201ENST00000309328 IGKV2-28A0A075B6P5 120 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 BCE1O60756 84 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 IGKV2D-28P01615 120 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 SMIM6P0DI80 62 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 INAFM2P0DMQ5 153 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 S100A7L2Q5SY68 101 aa11.03□□□□□ -0.64
SSSCA1-201ENST00000309328 PRYO14603 147 aa11.02□□□□□ -0.65
SSSCA1-201ENST00000309328 IGLV7-43P04211 117 aa11.02□□□□□ -0.65
SSSCA1-201ENST00000309328 REG3GQ6UW15 175 aa11.02□□□□□ -0.65
SSSCA1-201ENST00000309328 SPINK6Q6UWN8 80 aa11.02□□□□□ -0.65
SSSCA1-201ENST00000309328 KRTAP4-5Q9BYR2 181 aa11.02□□□□□ -0.65
SSSCA1-201ENST00000309328 DDTP30046 118 aa11.01□□□□□ -0.65
SSSCA1-201ENST00000309328 KRTAP11-1Q8IUC1 163 aa11.01□□□□□ -0.65
SSSCA1-201ENST00000309328 KCNQ1DNQ9H478 68 aa11.01□□□□□ -0.65
SSSCA1-201ENST00000309328 EIF4EBP3O60516 100 aaPredicted RBP11□□□□□ -0.65
SSSCA1-201ENST00000309328 MUSTN1Q8IVN3 82 aa11□□□□□ -0.65
SSSCA1-201ENST00000309328 HIST1H4GQ99525 98 aa11□□□□□ -0.65
SSSCA1-201ENST00000309328 TMEM126AQ9H061 195 aa11□□□□□ -0.65
SSSCA1-201ENST00000309328 TRBV10-3A0A0K0K1G6 114 aa10.99□□□□□ -0.65
SSSCA1-201ENST00000309328 IGLV6-57P01721 117 aa10.99□□□□□ -0.65
SSSCA1-201ENST00000309328 RPL28P46779 137 aaKnown RBP10.99□□□□□ -0.65
SSSCA1-201ENST00000309328 DIRC1Q969H9 104 aa10.98□□□□□ -0.65
SSSCA1-201ENST00000309328 ZNF861PO60384 105 aa10.97□□□□□ -0.65
SSSCA1-201ENST00000309328 TAL2Q16559 108 aa10.97□□□□□ -0.65
SSSCA1-201ENST00000309328 TRAV13-2A0A0B4J235 113 aa10.96□□□□□ -0.65
SSSCA1-201ENST00000309328 UBE2AP49459 152 aa10.96□□□□□ -0.65
SSSCA1-201ENST00000309328 LINC00337Q8N6G1 96 aa10.96□□□□□ -0.65
SSSCA1-201ENST00000309328 UQCR10Q9UDW1 63 aa10.96□□□□□ -0.65
SSSCA1-201ENST00000309328 PCLOQ9Y6V0 5065 aa10.95□□□□□ -0.66
SSSCA1-201ENST00000309328 H0Y9J4 135 aa10.95□□□□□ -0.66
SSSCA1-201ENST00000309328 SPRR1AP35321 89 aa10.95□□□□□ -0.66
SSSCA1-201ENST00000309328 OR13C6PQ8NH95 151 aa10.95□□□□□ -0.66
SSSCA1-201ENST00000309328 TRAV23DV6A0A075B6W5 121 aa10.94□□□□□ -0.66
SSSCA1-201ENST00000309328 LOC105371267A0A1B0GV96 52 aa10.93□□□□□ -0.66
SSSCA1-201ENST00000309328 HNRNPA3P51991 378 aaKnown RBP10.93□□□□□ -0.66
SSSCA1-201ENST00000309328 C2orf91Q6ZV80 131 aa10.93□□□□□ -0.66
SSSCA1-201ENST00000309328 FAM19A1Q7Z5A9 133 aa10.93□□□□□ -0.66
SSSCA1-201ENST00000309328 ETDCA0A1B0GVM5 59 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms