RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ABCA12Q86UK0 2595 aa11.97□□□□□ -0.49
SYNPO-201ENST00000307662 TLN2Q9Y4G6 2542 aa11.97□□□□□ -0.49
SYNPO-201ENST00000307662 CENPFP49454 3210 aa11.97□□□□□ -0.49
SYNPO-201ENST00000307662 H3BPC8 53 aa11.97□□□□□ -0.49
SYNPO-201ENST00000307662 X6R8D5 127 aa11.97□□□□□ -0.49
SYNPO-201ENST00000307662 A0A1B0GU69 56 aa11.96□□□□□ -0.49
SYNPO-201ENST00000307662 NUPR2A6NF83 97 aa11.96□□□□□ -0.49
SYNPO-201ENST00000307662 IGLV5-52A0A0A0MRZ9 124 aa11.95□□□□□ -0.5
SYNPO-201ENST00000307662 LINC00167Q96N53 147 aa11.94□□□□□ -0.5
SYNPO-201ENST00000307662 Q8NBF4 154 aa11.93□□□□□ -0.5
SYNPO-201ENST00000307662 FHL3Q13643 280 aa11.93□□□□□ -0.5
SYNPO-201ENST00000307662 USP9YO00507 2555 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-201ENST00000307662 SPAG11AQ6PDA7 123 aa11.93□□□□□ -0.5
SYNPO-201ENST00000307662 JMJD1CQ15652 2540 aa11.92□□□□□ -0.5
SYNPO-201ENST00000307662 ACYP2P14621 99 aa11.92□□□□□ -0.5
SYNPO-201ENST00000307662 COL4A2P08572 1712 aa11.92□□□□□ -0.5
SYNPO-201ENST00000307662 IGKV2D-30A0A075B6S6 120 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 IGKV2-30P06310 120 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 SERTAD4-AS1Q5TG53 156 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 Q6ZRX8 168 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 NHLRC4P0CG21 123 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-201ENST00000307662 C7orf65Q6ZTY9 151 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 LINC00476Q8WZB0 136 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 ERC2-IT1O76042 136 aa11.87□□□□□ -0.51
SYNPO-201ENST00000307662 FN1P02751 2386 aaKnown RBP11.86□□□□□ -0.51
SYNPO-201ENST00000307662 TRAV22A0A0B4J277 110 aa11.85□□□□□ -0.51
SYNPO-201ENST00000307662 ZFYVE26Q68DK2 2539 aa11.85□□□□□ -0.51
SYNPO-201ENST00000307662 FSHBP01225 129 aa11.85□□□□□ -0.51
SYNPO-201ENST00000307662 SETD2Q9BYW2 2564 aaPredicted RBP11.84□□□□□ -0.51
SYNPO-201ENST00000307662 DOPEY1Q5JWR5 2465 aa11.82□□□□□ -0.52
SYNPO-201ENST00000307662 PTPRBP23467 1997 aa11.81□□□□□ -0.52
SYNPO-201ENST00000307662 KLK9Q2XQG4 91 aa11.8□□□□□ -0.52
SYNPO-201ENST00000307662 C8orf87E5RJ46 101 aa11.79□□□□□ -0.52
SYNPO-201ENST00000307662 IGLV6-57P01721 117 aa11.79□□□□□ -0.52
SYNPO-201ENST00000307662 MOBPQ13875 183 aa11.79□□□□□ -0.52
SYNPO-201ENST00000307662 ST20-AS1Q8NBB2 130 aa11.79□□□□□ -0.52
SYNPO-201ENST00000307662 ATP11AUNQ6ZP68 121 aa11.78□□□□□ -0.52
SYNPO-201ENST00000307662 GVQW2A0A096LPI5 108 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-201ENST00000307662 H3BNG1 76 aa11.78□□□□□ -0.52
SYNPO-201ENST00000307662 TRBV7-4A0A0J9YYF1 115 aa11.77□□□□□ -0.53
SYNPO-201ENST00000307662 RPL37AP61513 92 aaKnown RBP11.76□□□□□ -0.53
SYNPO-201ENST00000307662 KLKP1Q107X0 134 aa11.76□□□□□ -0.53
SYNPO-201ENST00000307662 A8MUN3 132 aa11.76□□□□□ -0.53
SYNPO-201ENST00000307662 C1orf134Q5TEV5 83 aa11.76□□□□□ -0.53
SYNPO-201ENST00000307662 CHD8Q9HCK8 2581 aa11.75□□□□□ -0.53
SYNPO-201ENST00000307662 LRRK2Q5S007 2527 aa11.75□□□□□ -0.53
SYNPO-201ENST00000307662 GOLGB1Q14789 3259 aaKnown RBP11.75□□□□□ -0.53
SYNPO-201ENST00000307662 CYP4F30PQ9H0H9 118 aa11.75□□□□□ -0.53
SYNPO-201ENST00000307662 SPTBN4Q9H254 2564 aa11.73□□□□□ -0.53
SYNPO-201ENST00000307662 EIF4EBP3O60516 100 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-201ENST00000307662 K7EQZ3 153 aa11.72□□□□□ -0.53
SYNPO-201ENST00000307662 VPREB1P12018 145 aa11.72□□□□□ -0.53
SYNPO-201ENST00000307662 PKD1L2Q7Z442 2459 aa11.71□□□□□ -0.53
SYNPO-201ENST00000307662 EPM2AB3EWF7 344 aa11.71□□□□□ -0.54
SYNPO-201ENST00000307662 COA5Q86WW8 74 aa11.7□□□□□ -0.54
SYNPO-201ENST00000307662 ZNF462Q96JM2 2506 aa11.7□□□□□ -0.54
SYNPO-201ENST00000307662 PHF5AQ7RTV0 110 aaKnown RBP11.69□□□□□ -0.54
SYNPO-201ENST00000307662 LINC00336Q6ZUF6 198 aa11.69□□□□□ -0.54
SYNPO-201ENST00000307662 A8MWP4 228 aa11.69□□□□□ -0.54
SYNPO-201ENST00000307662 COL27A1Q8IZC6 1860 aaPredicted RBP11.68□□□□□ -0.54
SYNPO-201ENST00000307662 LOC101927531A0A1B0GV80 90 aa11.68□□□□□ -0.54
SYNPO-201ENST00000307662 Q6ZRP5 223 aa11.68□□□□□ -0.54
SYNPO-201ENST00000307662 SPACA4Q8TDM5 124 aa11.67□□□□□ -0.54
SYNPO-201ENST00000307662 H7BZZ5 65 aa11.66□□□□□ -0.54
SYNPO-201ENST00000307662 PCSK5Q92824 1860 aa11.66□□□□□ -0.54
SYNPO-201ENST00000307662 C16orf90A8MZG2 172 aa11.66□□□□□ -0.54
SYNPO-201ENST00000307662 LINC00313P59037 77 aa11.65□□□□□ -0.54
SYNPO-201ENST00000307662 MTORP42345 2549 aa11.64□□□□□ -0.55
SYNPO-201ENST00000307662 LINC00528Q8N1L1 170 aa11.63□□□□□ -0.55
SYNPO-201ENST00000307662 IGLV8-61A0A075B6I0 122 aa11.63□□□□□ -0.55
SYNPO-201ENST00000307662 Q8NAQ8 132 aa11.62□□□□□ -0.55
SYNPO-201ENST00000307662 KCNQ1DNQ9H478 68 aa11.6□□□□□ -0.55
SYNPO-201ENST00000307662 MUC4Q99102 2169 aa11.6□□□□□ -0.55
SYNPO-201ENST00000307662 MDFIQ99750 246 aa11.6□□□□□ -0.55
SYNPO-201ENST00000307662 MRPL34Q9BQ48 92 aaKnown RBP11.59□□□□□ -0.55
SYNPO-201ENST00000307662 IGLV1-50A0A075B6I6 118 aa11.58□□□□□ -0.56
SYNPO-201ENST00000307662 CD164Q04900 197 aa11.58□□□□□ -0.56
SYNPO-201ENST00000307662 POLQO75417 2590 aa11.57□□□□□ -0.56
SYNPO-201ENST00000307662 FAM168BA1KXE4 195 aa11.57□□□□□ -0.56
SYNPO-201ENST00000307662 LINC01600Q96MT4 127 aa11.55□□□□□ -0.56
SYNPO-201ENST00000307662 UQCR11O14957 56 aa11.55□□□□□ -0.56
SYNPO-201ENST00000307662 FAM229AH3BQW9 127 aa11.55□□□□□ -0.56
SYNPO-201ENST00000307662 LINC00588Q9Y4M8 146 aa11.55□□□□□ -0.56
SYNPO-201ENST00000307662 SPINT4Q6UDR6 99 aa11.54□□□□□ -0.56
SYNPO-201ENST00000307662 CHTF8P0CG12 524 aa11.54□□□□□ -0.56
SYNPO-201ENST00000307662 IGFL1Q6UW32 110 aa11.54□□□□□ -0.56
SYNPO-201ENST00000307662 PRR15Q8IV56 129 aa11.53□□□□□ -0.56
SYNPO-201ENST00000307662 ANKRD17O75179 2603 aaKnown RBP11.52□□□□□ -0.57
SYNPO-201ENST00000307662 C9orf129Q5T035 196 aaKnown RBP11.52□□□□□ -0.57
SYNPO-201ENST00000307662 DNAH10OSP0CZ25 163 aa11.5□□□□□ -0.57
SYNPO-201ENST00000307662 Q8N377 158 aa11.5□□□□□ -0.57
SYNPO-201ENST00000307662 CSNK1G2-AS1Q8NCQ2 148 aa11.5□□□□□ -0.57
SYNPO-201ENST00000307662 KTN1-AS1Q86SY8 53 aa11.5□□□□□ -0.57
SYNPO-201ENST00000307662 RTL8CO15255 209 aa11.48□□□□□ -0.57
SYNPO-201ENST00000307662 C8orf17Q9NRJ1 99 aa11.47□□□□□ -0.57
SYNPO-201ENST00000307662 ACANP16112 2415 aa11.47□□□□□ -0.57
SYNPO-201ENST00000307662 PRR34Q9NV39 138 aa11.46□□□□□ -0.57
SYNPO-201ENST00000307662 MIR22HGQ0VDD5 57 aa11.46□□□□□ -0.57
SYNPO-201ENST00000307662 NBDYA0A0U1RRE5 68 aa11.45□□□□□ -0.58
SYNPO-201ENST00000307662 Q96NJ1 140 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms