RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 A0A1B0GW15 77 aa5.75□□□□□ -1.49
TRIM28-210ENST00000597618 D6R8Y8 96 aa5.75□□□□□ -1.49
TRIM28-210ENST00000597618 PNRC1Q12796 327 aaPredicted RBP5.75□□□□□ -1.49
TRIM28-210ENST00000597618 TCTE3Q8IZS6 198 aa5.75□□□□□ -1.49
TRIM28-210ENST00000597618 EIF5A2Q9GZV4 153 aaKnown RBP5.75□□□□□ -1.49
TRIM28-210ENST00000597618 IGLV5-37A0A075B6J1 123 aa5.74□□□□□ -1.49
TRIM28-210ENST00000597618 NPYP01303 97 aa5.74□□□□□ -1.49
TRIM28-210ENST00000597618 CXCL5P42830 114 aa5.74□□□□□ -1.49
TRIM28-210ENST00000597618 SLC51BQ86UW2 128 aa5.74□□□□□ -1.49
TRIM28-210ENST00000597618 NKAPP1Q8N9T2 125 aa5.74□□□□□ -1.49
TRIM28-210ENST00000597618 PPBPP02775 128 aa5.73□□□□□ -1.49
TRIM28-210ENST00000597618 FAM74A3Q4VXF1 159 aa5.73□□□□□ -1.49
TRIM28-210ENST00000597618 IGKV2-28A0A075B6P5 120 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 F8W036 122 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 IGKV2D-28P01615 120 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 S100A8P05109 93 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 CFC1BP0CG36 223 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 PRLHP81277 87 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 C4orf48Q5BLP8 95 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 C3orf22Q8N5N4 141 aa5.72□□□□□ -1.49
TRIM28-210ENST00000597618 SMIM27A0A1W2PRY6 76 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 HERVK_113P63121 156 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 SEC11AP67812 179 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 BLOC1S1P78537 153 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 FAM19A3Q7Z5A8 133 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 AMELXQ99217 191 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 VCX2Q9H322 139 aa5.71□□□□□ -1.5
TRIM28-210ENST00000597618 A0A1B0GVG6 124 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 NPSP0C0P6 89 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 LCE2CQ5TA81 110 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 ZC2HC1BQ5TFG8 222 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 FAM19A1Q7Z5A9 133 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 ORMDL3Q8N138 153 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 PLEKHB2Q96CS7 222 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 CDKN2A-AS1Q9UH64 79 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 CYSLTR1Q9Y271 337 aa5.7□□□□□ -1.5
TRIM28-210ENST00000597618 C2orf66Q6UXQ4 117 aa5.69□□□□□ -1.5
TRIM28-210ENST00000597618 GNB1LQ9BYB4 327 aa5.69□□□□□ -1.5
TRIM28-210ENST00000597618 TMEM126AQ9H061 195 aa5.69□□□□□ -1.5
TRIM28-210ENST00000597618 GEMIN7Q9H840 131 aaKnown RBP5.69□□□□□ -1.5
TRIM28-210ENST00000597618 MRPL54Q6P161 138 aaKnown RBP5.68□□□□□ -1.5
TRIM28-210ENST00000597618 TMEM136Q6ZRR5 245 aa5.68□□□□□ -1.5
TRIM28-210ENST00000597618 CBLN2Q8IUK8 224 aa5.68□□□□□ -1.5
TRIM28-210ENST00000597618 PRELID3AQ96N28 172 aa5.68□□□□□ -1.5
TRIM28-210ENST00000597618 NDUFA12Q9UI09 145 aa5.68□□□□□ -1.5
TRIM28-210ENST00000597618 A0A1B0GXF2 115 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 TMEM238C9JI98 176 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 SCO1O75880 301 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 MT1HP80294 61 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 PAPPA-AS1Q5QFB9 102 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 DAND5Q8N907 189 aa5.67□□□□□ -1.5
TRIM28-210ENST00000597618 IGIPA6NJ69 53 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 PRSS47A8MTI9 375 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 SMIM1B2RUZ4 78 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 M0R378 163 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 SPINK1P00995 79 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 SRP19P09132 144 aaKnown RBP5.66□□□□□ -1.5
TRIM28-210ENST00000597618 RAB5BP61020 215 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 RPL23P62829 140 aaKnown RBP5.66□□□□□ -1.5
TRIM28-210ENST00000597618 ADIRFQ15847 76 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 Q8NBF4 154 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 COX7B2Q8TF08 81 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 HIGD2AQ9BW72 106 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 MAP1LC3AQ9H492 121 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 LAMTOR2Q9Y2Q5 125 aa5.66□□□□□ -1.5
TRIM28-210ENST00000597618 LOC389332A0A1B0GUA5 103 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 ORMDL2Q53FV1 153 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 PDZD11Q5EBL8 140 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 XP32Q5T750 250 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 ALKAL2Q6UX46 152 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 AKAP14Q86UN6 197 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 FAM19A2Q8N3H0 131 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 SPRR4Q96PI1 79 aa5.65□□□□□ -1.5
TRIM28-210ENST00000597618 ZNF706Q9Y5V0 76 aaPredicted RBP5.65□□□□□ -1.5
TRIM28-210ENST00000597618 KRTAP19-2Q3LHN2 52 aa5.64□□□□□ -1.51
TRIM28-210ENST00000597618 Q8N8P6 123 aa5.64□□□□□ -1.51
TRIM28-210ENST00000597618 K7EMI3 77 aa5.63□□□□□ -1.51
TRIM28-210ENST00000597618 VPREB1P12018 145 aa5.63□□□□□ -1.51
TRIM28-210ENST00000597618 LORP23490 312 aaPredicted RBP5.63□□□□□ -1.51
TRIM28-210ENST00000597618 ATP5L2Q7Z4Y8 100 aa5.63□□□□□ -1.51
TRIM28-210ENST00000597618 NAT8Q9UHE5 227 aa5.63□□□□□ -1.51
TRIM28-210ENST00000597618 ATP5LO75964 103 aa5.62□□□□□ -1.51
TRIM28-210ENST00000597618 KRTAP10-6P60371 365 aaPredicted RBP5.62□□□□□ -1.51
TRIM28-210ENST00000597618 RPL24P83731 157 aaKnown RBP5.62□□□□□ -1.51
TRIM28-210ENST00000597618 TIMM17AQ99595 171 aa5.62□□□□□ -1.51
TRIM28-210ENST00000597618 IGLV5-45A0A087WSX0 123 aa5.61□□□□□ -1.51
TRIM28-210ENST00000597618 TINCRA0A1B0GVN0 87 aa5.61□□□□□ -1.51
TRIM28-210ENST00000597618 KRTAP9-7A8MTY7 169 aa5.61□□□□□ -1.51
TRIM28-210ENST00000597618 G0S2P27469 103 aa5.61□□□□□ -1.51
TRIM28-210ENST00000597618 RPS29P62273 56 aaKnown RBP5.61□□□□□ -1.51
TRIM28-210ENST00000597618 hCG_2014768A0A024R1R8 64 aa5.6□□□□□ -1.51
TRIM28-210ENST00000597618 PFN2P35080 140 aa5.6□□□□□ -1.51
TRIM28-210ENST00000597618 SND1-IT1Q9HBX3 110 aa5.6□□□□□ -1.51
TRIM28-210ENST00000597618 SLC25A20O43772 301 aa5.59□□□□□ -1.51
TRIM28-210ENST00000597618 SPINK8P0C7L1 97 aa5.59□□□□□ -1.51
TRIM28-210ENST00000597618 Q8N377 158 aa5.59□□□□□ -1.51
TRIM28-210ENST00000597618 TOMM6Q96B49 74 aa5.59□□□□□ -1.51
TRIM28-210ENST00000597618 NXT2Q9NPJ8 142 aaKnown RBP5.59□□□□□ -1.51
TRIM28-210ENST00000597618 RAB14P61106 215 aa5.58□□□□□ -1.52
TRIM28-210ENST00000597618 ERASQ7Z444 233 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms