RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	TRGV4	A0A0C4DH28	118 aa		10.82	□□□□□ -0.68
DDX39A-209	ENST00000589318	INAFM2	P0DMQ5	153 aa		10.82	□□□□□ -0.68
DDX39A-209	ENST00000589318	MRPS36	P82909	103 aa	Known RBP	10.82	□□□□□ -0.68
DDX39A-209	ENST00000589318	RPL36A	P83881	106 aa	Known RBP	10.82	□□□□□ -0.68
DDX39A-209	ENST00000589318	RPL36AL	Q969Q0	106 aa	Known RBP	10.82	□□□□□ -0.68
DDX39A-209	ENST00000589318	LOC100131303	A0A0U1RQF7	123 aa		10.81	□□□□□ -0.68
DDX39A-209	ENST00000589318	HIST1H4A	P62805	103 aa	Known RBP	10.81	□□□□□ -0.68
DDX39A-209	ENST00000589318	CLEC2B	Q92478	149 aa		10.81	□□□□□ -0.68
DDX39A-209	ENST00000589318	TMEM258	P61165	79 aa		10.8	□□□□□ -0.68
DDX39A-209	ENST00000589318	NDUFA12	Q9UI09	145 aa		10.8	□□□□□ -0.68
DDX39A-209	ENST00000589318	CELA1	Q9UNI1	258 aa		10.8	□□□□□ -0.68
DDX39A-209	ENST00000589318	IGLV4-3	A0A075B6K6	122 aa		10.8	□□□□□ -0.68
DDX39A-209	ENST00000589318	TRAC	P01848	142 aa		10.8	□□□□□ -0.68
DDX39A-209	ENST00000589318	TRAV8-3	A0A0A6YYJ7	113 aa		10.79	□□□□□ -0.68
DDX39A-209	ENST00000589318		A0A0J9YXV3	536 aa		10.79	□□□□□ -0.68
DDX39A-209	ENST00000589318	COX7A2L	O14548	114 aa		10.79	□□□□□ -0.68
DDX39A-209	ENST00000589318	FAM104A	Q969W3	186 aa		10.79	□□□□□ -0.68
DDX39A-209	ENST00000589318	NTM-AS1	Q6ZSK4	140 aa		10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	DAZ4	Q86SG3	579 aa	Known RBP	10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	OPRPN	Q99935	248 aa	Predicted RBP	10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	RETN	Q9HD89	108 aa		10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	DAZ3	Q9NR90	486 aa	Known RBP	10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	C2orf48	Q96LS8	159 aa		10.78	□□□□□ -0.68
DDX39A-209	ENST00000589318	LOC107984640	A0A0U1RRK4	108 aa		10.77	□□□□□ -0.69
DDX39A-209	ENST00000589318	CIRBP	Q14011	172 aa	Known RBP	10.77	□□□□□ -0.69
DDX39A-209	ENST00000589318	VSIG2	Q96IQ7	327 aa		10.77	□□□□□ -0.69
DDX39A-209	ENST00000589318	IGHV3-64	A0A075B6Q5	118 aa		10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	TINCR	A0A1B0GVN0	87 aa		10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	IGKV2-29	A2NJV5	120 aa	Predicted RBP	10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	ADAMTSL4-AS1	Q5T5F5	129 aa		10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	SMCR5	Q8TEV8	140 aa		10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	UBE2D4	Q9Y2X8	147 aa		10.76	□□□□□ -0.69
DDX39A-209	ENST00000589318	MGAM2	Q2M2H8	2515 aa		10.75	□□□□□ -0.69
DDX39A-209	ENST00000589318	PRB2	P02812	416 aa	Predicted RBP	10.75	□□□□□ -0.69
DDX39A-209	ENST00000589318	TENM3	Q9P273	2699 aa		10.75	□□□□□ -0.69
DDX39A-209	ENST00000589318	DAD1	P61803	113 aa		10.74	□□□□□ -0.69
DDX39A-209	ENST00000589318	KPRP	Q5T749	579 aa	Predicted RBP	10.74	□□□□□ -0.69
DDX39A-209	ENST00000589318	SPART-AS1	P0CW21	52 aa		10.74	□□□□□ -0.69
DDX39A-209	ENST00000589318	PRO0255	Q9UI72	69 aa		10.74	□□□□□ -0.69
DDX39A-209	ENST00000589318		K7EIL1	84 aa		10.72	□□□□□ -0.69
DDX39A-209	ENST00000589318	NDUFA1	O15239	70 aa		10.72	□□□□□ -0.69
DDX39A-209	ENST00000589318	RPL18A	Q02543	176 aa	Known RBP	10.72	□□□□□ -0.69
DDX39A-209	ENST00000589318	GYPE	P15421	78 aa		10.71	□□□□□ -0.69
DDX39A-209	ENST00000589318	SERP2	Q8N6R1	65 aa		10.7	□□□□□ -0.7
DDX39A-209	ENST00000589318	BAALC-AS2	P0C853	105 aa		10.7	□□□□□ -0.7
DDX39A-209	ENST00000589318	DPH3	Q96FX2	82 aa		10.7	□□□□□ -0.7
DDX39A-209	ENST00000589318	PAX4	O43316	350 aa		10.69	□□□□□ -0.7
DDX39A-209	ENST00000589318	RNASE13	Q5GAN3	156 aa	Known RBP	10.69	□□□□□ -0.7
DDX39A-209	ENST00000589318	C11orf68	Q9H3H3	251 aa	Known RBP	10.69	□□□□□ -0.7
DDX39A-209	ENST00000589318		Q6JHZ5	121 aa		10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	MRAP	Q8TCY5	172 aa		10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	KLK5	Q9Y337	293 aa	Predicted RBP	10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	TRBV6-8	A0A0A6YYG3	113 aa		10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	TIRAP	P58753	221 aa		10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	TMEM243	Q9BU79	118 aa		10.68	□□□□□ -0.7
DDX39A-209	ENST00000589318	NDUFC2-KCTD14	E9PQ53	114 aa		10.67	□□□□□ -0.7
DDX39A-209	ENST00000589318	HUWE1	Q7Z6Z7	4374 aa	Known RBP	10.67	□□□□□ -0.7
DDX39A-209	ENST00000589318	hADV29S1	A0JD25	119 aa		10.66	□□□□□ -0.7
DDX39A-209	ENST00000589318	LINC00308	Q8TCZ7	52 aa		10.66	□□□□□ -0.7
DDX39A-209	ENST00000589318	IGLV5-45	A0A087WSX0	123 aa		10.66	□□□□□ -0.7
DDX39A-209	ENST00000589318		F5H768	121 aa		10.66	□□□□□ -0.7
DDX39A-209	ENST00000589318		A0A0J9YWU9	116 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318	HTN3	P15516	51 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318	TM2D3	Q9BRN9	247 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318		A0A096LPF7	62 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318	DGAT2L7P	Q6IED9	249 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318	CDC42SE2	Q9NRR3	84 aa		10.64	□□□□□ -0.71
DDX39A-209	ENST00000589318	DNAL4	O96015	105 aa		10.63	□□□□□ -0.71
DDX39A-209	ENST00000589318	MAL	P21145	153 aa		10.63	□□□□□ -0.71
DDX39A-209	ENST00000589318	NPC2	P61916	151 aa		10.63	□□□□□ -0.71
DDX39A-209	ENST00000589318	UPK3B	Q9BT76	320 aa		10.63	□□□□□ -0.71
DDX39A-209	ENST00000589318	UBE2L6	O14933	153 aa		10.62	□□□□□ -0.71
DDX39A-209	ENST00000589318		Q6ZTC4	211 aa		10.62	□□□□□ -0.71
DDX39A-209	ENST00000589318	TRAV13-2	A0A0B4J235	113 aa		10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	NDUFC2	O95298	119 aa		10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	C22orf24	Q9Y442	160 aa		10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	IGLV4-60	A0A075B6I1	120 aa		10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	IGLV5-39	A0A0G2JS06	123 aa		10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	RPL28	P46779	137 aa	Known RBP	10.6	□□□□□ -0.71
DDX39A-209	ENST00000589318	TRAV13-1	A0A0B4J241	112 aa		10.59	□□□□□ -0.71
DDX39A-209	ENST00000589318	S100A7L2	Q5SY68	101 aa		10.59	□□□□□ -0.71
DDX39A-209	ENST00000589318	FAM19A3	Q7Z5A8	133 aa		10.59	□□□□□ -0.71
DDX39A-209	ENST00000589318	DNAH9	Q9NYC9	4486 aa		10.59	□□□□□ -0.71
DDX39A-209	ENST00000589318	OBSCN-AS1	Q96MR7	158 aa		10.58	□□□□□ -0.72
DDX39A-209	ENST00000589318	NANOS2	P60321	138 aa	Known RBP	10.58	□□□□□ -0.72
DDX39A-209	ENST00000589318	LINC00242	Q5T6M2	205 aa		10.58	□□□□□ -0.72
DDX39A-209	ENST00000589318	ATP5EP2	Q5VTU8	51 aa		10.58	□□□□□ -0.72
DDX39A-209	ENST00000589318	COX6A2	Q02221	97 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318	C11orf45	Q8TAV5	145 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318		Q9H8V8	135 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318	DNHD1	Q96M86	4753 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318	USP17L23	D6RBM5	183 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318		H0YGX0	51 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318		H3BNG1	76 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318	CDKN2A-AS1	Q9UH64	79 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318	COL7A1	Q02388	2944 aa		10.56	□□□□□ -0.72
DDX39A-209	ENST00000589318		A0A1B0GUV1	79 aa		10.55	□□□□□ -0.72
DDX39A-209	ENST00000589318		Q5XG85	94 aa		10.54	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms