RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SS18Q15532 418 aa15.76■□□□□ 0.11
VPS53-211ENST00000571805 C6orf226Q5I0X4 101 aa15.76■□□□□ 0.11
VPS53-211ENST00000571805 KMT2BQ9UMN6 2715 aaPredicted RBP15.75■□□□□ 0.11
VPS53-211ENST00000571805 TRAV26-1A0A087WT03 109 aa15.75■□□□□ 0.11
VPS53-211ENST00000571805 A0A096LPF7 62 aa15.75■□□□□ 0.11
VPS53-211ENST00000571805 NHLRC4P0CG21 123 aaPredicted RBP15.75■□□□□ 0.11
VPS53-211ENST00000571805 LYRM9A8MSI8 78 aa15.73■□□□□ 0.11
VPS53-211ENST00000571805 PAX4O43316 350 aa15.73■□□□□ 0.11
VPS53-211ENST00000571805 NDUFV3P56181 108 aaKnown RBP15.72■□□□□ 0.11
VPS53-211ENST00000571805 C11orf68Q9H3H3 251 aaKnown RBP15.72■□□□□ 0.11
VPS53-211ENST00000571805 Q9HAA7 133 aa15.72■□□□□ 0.11
VPS53-211ENST00000571805 CLPSL2Q6UWE3 100 aa15.72■□□□□ 0.11
VPS53-211ENST00000571805 Q8IZM0 81 aa15.72■□□□□ 0.11
VPS53-211ENST00000571805 ACYP1P07311 99 aa15.71■□□□□ 0.11
VPS53-211ENST00000571805 C9orf66Q5T8R8 295 aa15.71■□□□□ 0.11
VPS53-211ENST00000571805 LINC01561Q8N1V8 128 aa15.7■□□□□ 0.1
VPS53-211ENST00000571805 A0A087WYN8 130 aa15.69■□□□□ 0.1
VPS53-211ENST00000571805 DEFB4AO15263 64 aa15.69■□□□□ 0.1
VPS53-211ENST00000571805 MALP21145 153 aa15.69■□□□□ 0.1
VPS53-211ENST00000571805 DEFB135Q30KP9 77 aa15.69■□□□□ 0.1
VPS53-211ENST00000571805 H0YGX0 51 aa15.68■□□□□ 0.1
VPS53-211ENST00000571805 LINC00269Q8N2A0 174 aa15.67■□□□□ 0.1
VPS53-211ENST00000571805 TRBV7-7A0A0K0K1E9 115 aa15.65■□□□□ 0.1
VPS53-211ENST00000571805 KIAA0087Q14695 138 aa15.65■□□□□ 0.1
VPS53-211ENST00000571805 IGHV4-28A0A0C4DH34 117 aa15.64■□□□□ 0.09
VPS53-211ENST00000571805 TENM1Q9UKZ4 2725 aa15.64■□□□□ 0.09
VPS53-211ENST00000571805 CD164L2Q6UWJ8 174 aa15.64■□□□□ 0.09
VPS53-211ENST00000571805 Q8N3U1 123 aa15.64■□□□□ 0.09
VPS53-211ENST00000571805 SMCR5Q8TEV8 140 aa15.64■□□□□ 0.09
VPS53-211ENST00000571805 OR13C6PQ8NH95 151 aa15.63■□□□□ 0.09
VPS53-211ENST00000571805 SDIM1Q6ZPB5 146 aa15.63■□□□□ 0.09
VPS53-211ENST00000571805 ATP5G1P05496 136 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 OTOGQ6ZRI0 2925 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 INAFM1C9JVW0 142 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 DNAL4O96015 105 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 INAFM2P0DMQ5 153 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 APOC4P55056 127 aa15.62■□□□□ 0.09
VPS53-211ENST00000571805 CHCHD10Q8WYQ3 142 aaPredicted RBP15.62■□□□□ 0.09
VPS53-211ENST00000571805 DAD1P61803 113 aa15.61■□□□□ 0.09
VPS53-211ENST00000571805 CELA1Q9UNI1 258 aa15.6■□□□□ 0.09
VPS53-211ENST00000571805 ANGP03950 147 aaKnown RBP15.59■□□□□ 0.09
VPS53-211ENST00000571805 REG3AQ06141 175 aa15.59■□□□□ 0.09
VPS53-211ENST00000571805 Q8NAQ8 132 aa15.59■□□□□ 0.09
VPS53-211ENST00000571805 LECT2O14960 151 aa15.58■□□□□ 0.09
VPS53-211ENST00000571805 C9orf129Q5T035 196 aaKnown RBP15.58■□□□□ 0.09
VPS53-211ENST00000571805 NSD1Q96L73 2696 aaPredicted RBP15.58■□□□□ 0.09
VPS53-211ENST00000571805 HECTD1Q9ULT8 2610 aa15.58■□□□□ 0.08
VPS53-211ENST00000571805 IGLV10-54A0A075B6I4 117 aa15.58■□□□□ 0.08
VPS53-211ENST00000571805 LINC00643Q86TS7 51 aa15.57■□□□□ 0.08
VPS53-211ENST00000571805 COX17Q14061 63 aa15.56■□□□□ 0.08
VPS53-211ENST00000571805 NANOS2P60321 138 aaKnown RBP15.56■□□□□ 0.08
VPS53-211ENST00000571805 PRR3P79522 188 aaKnown RBP15.56■□□□□ 0.08
VPS53-211ENST00000571805 OBSCN-AS1Q96MR7 158 aa15.56■□□□□ 0.08
VPS53-211ENST00000571805 CXCL5P42830 114 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 CFAP161Q6P656 301 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 IMUPQ9GZP8 106 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 MIFP14174 115 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 GAGE2AQ6NT46 116 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 NOTCH2Q04721 2471 aa15.55■□□□□ 0.08
VPS53-211ENST00000571805 NDUFC2O95298 119 aa15.53■□□□□ 0.08
VPS53-211ENST00000571805 CCDC179H3BU77 68 aa15.52■□□□□ 0.08
VPS53-211ENST00000571805 C9orf116Q5BN46 136 aaPredicted RBP15.52■□□□□ 0.08
VPS53-211ENST00000571805 SLPIP03973 132 aa15.51■□□□□ 0.07
VPS53-211ENST00000571805 SPART-AS1P0CW21 52 aa15.5■□□□□ 0.07
VPS53-211ENST00000571805 C14orf132Q9NPU4 83 aa15.5■□□□□ 0.07
VPS53-211ENST00000571805 B5MCH6 92 aa15.49■□□□□ 0.07
VPS53-211ENST00000571805 LELP1Q5T871 98 aa15.49■□□□□ 0.07
VPS53-211ENST00000571805 LINC00167Q96N53 147 aa15.48■□□□□ 0.07
VPS53-211ENST00000571805 Q8NDZ9 215 aa15.48■□□□□ 0.07
VPS53-211ENST00000571805 KLK5Q9Y337 293 aaPredicted RBP15.48■□□□□ 0.07
VPS53-211ENST00000571805 HTN3P15516 51 aa15.47■□□□□ 0.07
VPS53-211ENST00000571805 TRRAPQ9Y4A5 3859 aa15.47■□□□□ 0.07
VPS53-211ENST00000571805 TMEM126AQ9H061 195 aa15.47■□□□□ 0.07
VPS53-211ENST00000571805 ORMDL1Q9P0S3 153 aa15.47■□□□□ 0.07
VPS53-211ENST00000571805 WFDC9Q8NEX5 89 aa15.46■□□□□ 0.07
VPS53-211ENST00000571805 ATRQ13535 2644 aa15.46■□□□□ 0.07
VPS53-211ENST00000571805 TEP1Q99973 2627 aaKnown RBP15.46■□□□□ 0.07
VPS53-211ENST00000571805 NCR3O14931 201 aa15.46■□□□□ 0.06
VPS53-211ENST00000571805 IGHV4-30-4P0DP06 118 aa15.46■□□□□ 0.06
VPS53-211ENST00000571805 C10orf25Q5T742 122 aa15.45■□□□□ 0.06
VPS53-211ENST00000571805 A0A1B0GX51 115 aa15.44■□□□□ 0.06
VPS53-211ENST00000571805 C6orf223Q8N319 242 aa15.44■□□□□ 0.06
VPS53-211ENST00000571805 PRR34Q9NV39 138 aa15.44■□□□□ 0.06
VPS53-211ENST00000571805 FAM236AA0A1B0GUQ0 79 aa15.44■□□□□ 0.06
VPS53-211ENST00000571805 FAM236BA0A1B0GV22 79 aa15.44■□□□□ 0.06
VPS53-211ENST00000571805 UNQ6190/PRO20217Q6UXQ8 127 aa15.43■□□□□ 0.06
VPS53-211ENST00000571805 Q8N814 137 aa15.43■□□□□ 0.06
VPS53-211ENST00000571805 WIPF1O43516 503 aa15.43■□□□□ 0.06
VPS53-211ENST00000571805 SPAG11BQ08648 103 aa15.42■□□□□ 0.06
VPS53-211ENST00000571805 HIVEP1P15822 2718 aa15.42■□□□□ 0.06
VPS53-211ENST00000571805 KLK12Q9UKR0 248 aa15.41■□□□□ 0.06
VPS53-211ENST00000571805 ENHOQ6UWT2 76 aa15.4■□□□□ 0.06
VPS53-211ENST00000571805 LINC00526Q96FQ7 95 aa15.4■□□□□ 0.06
VPS53-211ENST00000571805 A0A0J9YWU9 116 aa15.4■□□□□ 0.06
VPS53-211ENST00000571805 SS18L2Q9UHA2 77 aa15.39■□□□□ 0.05
VPS53-211ENST00000571805 CYSRT1A8MQ03 144 aa15.39■□□□□ 0.05
VPS53-211ENST00000571805 LINC00846Q9NV44 126 aa15.38■□□□□ 0.05
VPS53-211ENST00000571805 LYPD5Q6UWN5 251 aa15.38■□□□□ 0.05
VPS53-211ENST00000571805 C6orf99Q4VX62 202 aa15.37■□□□□ 0.05
VPS53-211ENST00000571805 MUC7Q8TAX7 377 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms