RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PACRGQ96M98 296 aaPredicted RBP9.74□□□□□ -0.85
CLN3-229ENST00000567963 AMELXQ99217 191 aa9.74□□□□□ -0.85
CLN3-229ENST00000567963 M0QXV9 152 aa9.73□□□□□ -0.85
CLN3-229ENST00000567963 C9orf129Q5T035 196 aaKnown RBP9.73□□□□□ -0.85
CLN3-229ENST00000567963 Q6ZN92 141 aa9.73□□□□□ -0.85
CLN3-229ENST00000567963 VCX2Q9H322 139 aa9.73□□□□□ -0.85
CLN3-229ENST00000567963 ORMDL2Q53FV1 153 aa9.72□□□□□ -0.85
CLN3-229ENST00000567963 K7EMI3 77 aa9.72□□□□□ -0.85
CLN3-229ENST00000567963 NPSP0C0P6 89 aa9.72□□□□□ -0.85
CLN3-229ENST00000567963 UBE2BP63146 152 aa9.72□□□□□ -0.85
CLN3-229ENST00000567963 LPAP08519 4548 aa9.72□□□□□ -0.85
CLN3-229ENST00000567963 IGIPA6NJ69 53 aa9.71□□□□□ -0.86
CLN3-229ENST00000567963 FAM19A3Q7Z5A8 133 aa9.71□□□□□ -0.86
CLN3-229ENST00000567963 MRPL18Q9H0U6 180 aaKnown RBP9.71□□□□□ -0.86
CLN3-229ENST00000567963 PRSS2P07478 247 aa9.7□□□□□ -0.86
CLN3-229ENST00000567963 KRTAP1-4P0C5Y4 121 aa9.69□□□□□ -0.86
CLN3-229ENST00000567963 CKS1BP61024 79 aa9.69□□□□□ -0.86
CLN3-229ENST00000567963 C6orf226Q5I0X4 101 aa9.69□□□□□ -0.86
CLN3-229ENST00000567963 NXT2Q9NPJ8 142 aaKnown RBP9.69□□□□□ -0.86
CLN3-229ENST00000567963 TOMM7Q9P0U1 55 aa9.69□□□□□ -0.86
CLN3-229ENST00000567963 Q8IZM0 81 aa9.68□□□□□ -0.86
CLN3-229ENST00000567963 TRAPPC1Q9Y5R8 145 aa9.68□□□□□ -0.86
CLN3-229ENST00000567963 IGLV1-50A0A075B6I6 118 aa9.67□□□□□ -0.86
CLN3-229ENST00000567963 ALKBH7Q9BT30 221 aaPredicted RBP9.67□□□□□ -0.86
CLN3-229ENST00000567963 HERVK_113P63121 156 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 SEC11AP67812 179 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 FABP9Q0Z7S8 132 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 PAPPA-AS1Q5QFB9 102 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 CDKN2A-AS1Q9UH64 79 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 TRGC2P03986 189 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 G0S2P27469 103 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 LINC00469Q8N7U9 141 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 TIMM17AQ99595 171 aa9.66□□□□□ -0.86
CLN3-229ENST00000567963 KIAA1644Q3SXP7 199 aa9.65□□□□□ -0.87
CLN3-229ENST00000567963 TOMM6Q96B49 74 aa9.65□□□□□ -0.87
CLN3-229ENST00000567963 C22orf24Q9Y442 160 aa9.65□□□□□ -0.87
CLN3-229ENST00000567963 GEMIN7Q9H840 131 aaKnown RBP9.64□□□□□ -0.87
CLN3-229ENST00000567963 XAGE1AQ9HD64 81 aa9.64□□□□□ -0.87
CLN3-229ENST00000567963 F8VRH5 84 aa9.63□□□□□ -0.87
CLN3-229ENST00000567963 ZNF861PO60384 105 aa9.63□□□□□ -0.87
CLN3-229ENST00000567963 NUPR1O60356 82 aa9.61□□□□□ -0.87
CLN3-229ENST00000567963 RPL13AP40429 203 aaKnown RBP9.61□□□□□ -0.87
CLN3-229ENST00000567963 LBHQ53QV2 105 aaPredicted RBP9.61□□□□□ -0.87
CLN3-229ENST00000567963 ERASQ7Z444 233 aa9.61□□□□□ -0.87
CLN3-229ENST00000567963 C18orf32Q8TCD1 76 aa9.6□□□□□ -0.87
CLN3-229ENST00000567963 SCGB3A1Q96QR1 104 aa9.6□□□□□ -0.87
CLN3-229ENST00000567963 CXCL5P42830 114 aa9.59□□□□□ -0.87
CLN3-229ENST00000567963 TP73-AS1Q9UF72 201 aa9.59□□□□□ -0.87
CLN3-229ENST00000567963 SMIM1B2RUZ4 78 aa9.59□□□□□ -0.87
CLN3-229ENST00000567963 TINCRA0A1B0GVN0 87 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BKO60814 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BJP06899 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BOP23527 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BBP33778 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BDP58876 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BCP62807 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST2H2BEQ16778 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 PDZD11Q5EBL8 140 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.58□□□□□ -0.88
CLN3-229ENST00000567963 MRPL55Q7Z7F7 128 aaKnown RBP9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BHQ93079 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BNQ99877 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 HIST1H2BMQ99879 126 aa9.58□□□□□ -0.88
CLN3-229ENST00000567963 LINC01546A6NGU7 62 aa9.57□□□□□ -0.88
CLN3-229ENST00000567963 IGLV5-45A0A087WSX0 123 aa9.56□□□□□ -0.88
CLN3-229ENST00000567963 LINC01549A6NIU2 74 aa9.56□□□□□ -0.88
CLN3-229ENST00000567963 COX7B2Q8TF08 81 aa9.56□□□□□ -0.88
CLN3-229ENST00000567963 CST9LQ9H4G1 147 aa9.55□□□□□ -0.88
CLN3-229ENST00000567963 URB1-AS1Q96HZ7 61 aa9.54□□□□□ -0.88
CLN3-229ENST00000567963 LINC00167Q96N53 147 aa9.54□□□□□ -0.88
CLN3-229ENST00000567963 BCE1O60756 84 aa9.53□□□□□ -0.88
CLN3-229ENST00000567963 RPL28P46779 137 aaKnown RBP9.53□□□□□ -0.88
CLN3-229ENST00000567963 PRR4Q16378 134 aa9.53□□□□□ -0.88
CLN3-229ENST00000567963 RPL37AP8A6NKH3 93 aa9.53□□□□□ -0.88
CLN3-229ENST00000567963 LINC00310P59036 64 aa9.53□□□□□ -0.88
CLN3-229ENST00000567963 RAB5BP61020 215 aa9.53□□□□□ -0.88
CLN3-229ENST00000567963 SPINK8P0C7L1 97 aa9.52□□□□□ -0.89
CLN3-229ENST00000567963 PMVKQ15126 192 aa9.52□□□□□ -0.89
CLN3-229ENST00000567963 COA6Q5JTJ3 125 aaKnown RBP9.52□□□□□ -0.89
CLN3-229ENST00000567963 A0A087X002 238 aa9.51□□□□□ -0.89
CLN3-229ENST00000567963 CHCHD1Q96BP2 118 aaKnown RBP9.51□□□□□ -0.89
CLN3-229ENST00000567963 LINC00614P0C842 121 aa9.5□□□□□ -0.89
CLN3-229ENST00000567963 FA2HQ7L5A8 372 aa9.5□□□□□ -0.89
CLN3-229ENST00000567963 IGLV5-37A0A075B6J1 123 aa9.49□□□□□ -0.89
CLN3-229ENST00000567963 GAGE10A6NGK3 116 aa9.49□□□□□ -0.89
CLN3-229ENST00000567963 SERF1AO75920 110 aa9.49□□□□□ -0.89
CLN3-229ENST00000567963 BAGE3Q86Y29 109 aa9.49□□□□□ -0.89
CLN3-229ENST00000567963 MUC2Q02817 5179 aa9.48□□□□□ -0.89
CLN3-229ENST00000567963 TSPAN13O95857 204 aa9.48□□□□□ -0.89
CLN3-229ENST00000567963 CRYGAP11844 174 aa9.48□□□□□ -0.89
CLN3-229ENST00000567963 A0A096LNJ9 63 aa9.47□□□□□ -0.89
CLN3-229ENST00000567963 H3BRM9 83 aa9.47□□□□□ -0.89
CLN3-229ENST00000567963 ATP5LO75964 103 aa9.47□□□□□ -0.89
CLN3-229ENST00000567963 NKAPP1Q8N9T2 125 aa9.47□□□□□ -0.89
CLN3-229ENST00000567963 TYMSOSQ8TAI1 123 aa9.47□□□□□ -0.89
CLN3-229ENST00000567963 IGLC3P0DOY3 106 aa9.46□□□□□ -0.9
CLN3-229ENST00000567963 KRTAP13-1Q8IUC0 172 aa9.46□□□□□ -0.9
CLN3-229ENST00000567963 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
CLN3-229ENST00000567963 HSBP1O75506 76 aa9.45□□□□□ -0.9
CLN3-229ENST00000567963 PFN2P35080 140 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms