RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 GAGE2DQ9UEU5 116 aa10.42□□□□□ -0.74
CLK3-210ENST00000563112 HERVK_113P63121 156 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 C2orf82Q6UX34 121 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 FAM19A3Q7Z5A8 133 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 TOMM6Q96B49 74 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 YPEL4Q96NS1 127 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 TOMM7Q9P0U1 55 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 PSORS1C2Q9UIG4 136 aa10.41□□□□□ -0.74
CLK3-210ENST00000563112 LINC01549A6NIU2 74 aa10.4□□□□□ -0.74
CLK3-210ENST00000563112 AKR1D1P51857 326 aa10.4□□□□□ -0.74
CLK3-210ENST00000563112 CKS1BP61024 79 aa10.4□□□□□ -0.74
CLK3-210ENST00000563112 C6orf226Q5I0X4 101 aa10.4□□□□□ -0.74
CLK3-210ENST00000563112 SCGB3A1Q96QR1 104 aa10.4□□□□□ -0.74
CLK3-210ENST00000563112 GEMIN7Q9H840 131 aaKnown RBP10.4□□□□□ -0.74
CLK3-210ENST00000563112 C1orf137Q5JT78 98 aa10.39□□□□□ -0.75
CLK3-210ENST00000563112 ERASQ7Z444 233 aa10.39□□□□□ -0.75
CLK3-210ENST00000563112 C5orf52A6NGY3 159 aa10.38□□□□□ -0.75
CLK3-210ENST00000563112 NDUFC2-KCTD14E9PQ53 114 aa10.38□□□□□ -0.75
CLK3-210ENST00000563112 FAM19A5Q7Z5A7 132 aaPredicted RBP10.38□□□□□ -0.75
CLK3-210ENST00000563112 Q8IZM0 81 aa10.38□□□□□ -0.75
CLK3-210ENST00000563112 ALKBH7Q9BT30 221 aaPredicted RBP10.38□□□□□ -0.75
CLK3-210ENST00000563112 FAM168BA1KXE4 195 aa10.37□□□□□ -0.75
CLK3-210ENST00000563112 S100A2P29034 98 aa10.37□□□□□ -0.75
CLK3-210ENST00000563112 FABP9Q0Z7S8 132 aa10.37□□□□□ -0.75
CLK3-210ENST00000563112 SMIM6P0DI80 62 aa10.36□□□□□ -0.75
CLK3-210ENST00000563112 MRPL18Q9H0U6 180 aaKnown RBP10.36□□□□□ -0.75
CLK3-210ENST00000563112 CDKN2A-AS1Q9UH64 79 aa10.36□□□□□ -0.75
CLK3-210ENST00000563112 SNRPEP62304 92 aaKnown RBP10.35□□□□□ -0.75
CLK3-210ENST00000563112 FA2HQ7L5A8 372 aa10.35□□□□□ -0.75
CLK3-210ENST00000563112 TNXBP22105 4242 aa10.34□□□□□ -0.75
CLK3-210ENST00000563112 LINC01546A6NGU7 62 aa10.34□□□□□ -0.75
CLK3-210ENST00000563112 LINC00469Q8N7U9 141 aa10.34□□□□□ -0.75
CLK3-210ENST00000563112 M0QXV9 152 aa10.33□□□□□ -0.76
CLK3-210ENST00000563112 UBE2BP63146 152 aa10.33□□□□□ -0.76
CLK3-210ENST00000563112 LINC00518Q8N0U6 118 aa10.33□□□□□ -0.76
CLK3-210ENST00000563112 TINCRA0A1B0GVN0 87 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 F8VRH5 84 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 TRGC2P03986 189 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 IGLV7-43P04211 117 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 CXCL5P42830 114 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 KRTAP10-8P60410 259 aa10.32□□□□□ -0.76
CLK3-210ENST00000563112 C9orf129Q5T035 196 aaKnown RBP10.32□□□□□ -0.76
CLK3-210ENST00000563112 NDUFA6P56556 154 aa10.31□□□□□ -0.76
CLK3-210ENST00000563112 S100A12P80511 92 aa10.31□□□□□ -0.76
CLK3-210ENST00000563112 DIRC1Q969H9 104 aa10.31□□□□□ -0.76
CLK3-210ENST00000563112 PMVKQ15126 192 aa10.3□□□□□ -0.76
CLK3-210ENST00000563112 PDZD11Q5EBL8 140 aa10.3□□□□□ -0.76
CLK3-210ENST00000563112 CST9LQ9H4G1 147 aa10.3□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BKO60814 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BJP06899 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BOP23527 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BBP33778 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BDP58876 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BCP62807 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST2H2BEQ16778 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.29□□□□□ -0.76
CLK3-210ENST00000563112 KRTAP7-1Q8IUC3 87 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 COX7B2Q8TF08 81 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BHQ93079 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BNQ99877 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 HIST1H2BMQ99879 126 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 TRAPPC1Q9Y5R8 145 aa10.29□□□□□ -0.76
CLK3-210ENST00000563112 SMIM1B2RUZ4 78 aa10.28□□□□□ -0.76
CLK3-210ENST00000563112 KRTAP11-1Q8IUC1 163 aa10.28□□□□□ -0.76
CLK3-210ENST00000563112 UBR4Q5T4S7 5183 aa10.27□□□□□ -0.77
CLK3-210ENST00000563112 IGLV5-45A0A087WSX0 123 aa10.27□□□□□ -0.77
CLK3-210ENST00000563112 C12orf57Q99622 126 aa10.27□□□□□ -0.77
CLK3-210ENST00000563112 XAGE1AQ9HD64 81 aa10.27□□□□□ -0.77
CLK3-210ENST00000563112 H3BRM9 83 aa10.26□□□□□ -0.77
CLK3-210ENST00000563112 LBHQ53QV2 105 aaPredicted RBP10.26□□□□□ -0.77
CLK3-210ENST00000563112 COA6Q5JTJ3 125 aaKnown RBP10.26□□□□□ -0.77
CLK3-210ENST00000563112 H0Y9J4 135 aa10.25□□□□□ -0.77
CLK3-210ENST00000563112 C22orf24Q9Y442 160 aa10.25□□□□□ -0.77
CLK3-210ENST00000563112 SPINK8P0C7L1 97 aa10.24□□□□□ -0.77
CLK3-210ENST00000563112 LINC00614P0C842 121 aa10.24□□□□□ -0.77
CLK3-210ENST00000563112 C18orf32Q8TCD1 76 aa10.24□□□□□ -0.77
CLK3-210ENST00000563112 ODF1Q14990 250 aa10.23□□□□□ -0.77
CLK3-210ENST00000563112 HBDP02042 147 aa10.22□□□□□ -0.77
CLK3-210ENST00000563112 HIST3H2BBQ8N257 126 aa10.22□□□□□ -0.77
CLK3-210ENST00000563112 NUPR1O60356 82 aa10.21□□□□□ -0.77
CLK3-210ENST00000563112 TP73-AS1Q9UF72 201 aa10.21□□□□□ -0.77
CLK3-210ENST00000563112 A0A096LNJ9 63 aa10.2□□□□□ -0.78
CLK3-210ENST00000563112 ATP5LO75964 103 aa10.2□□□□□ -0.78
CLK3-210ENST00000563112 IGLC3P0DOY3 106 aa10.2□□□□□ -0.78
CLK3-210ENST00000563112 URB1-AS1Q96HZ7 61 aa10.2□□□□□ -0.78
CLK3-210ENST00000563112 MRPL55Q7Z7F7 128 aaKnown RBP10.19□□□□□ -0.78
CLK3-210ENST00000563112 PRR26Q8N8Z3 221 aa10.19□□□□□ -0.78
CLK3-210ENST00000563112 PMCHL1Q16048 86 aa10.18□□□□□ -0.78
CLK3-210ENST00000563112 IGLV1-50A0A075B6I6 118 aa10.17□□□□□ -0.78
CLK3-210ENST00000563112 ZNF861PO60384 105 aa10.17□□□□□ -0.78
CLK3-210ENST00000563112 FABP4P15090 132 aa10.17□□□□□ -0.78
CLK3-210ENST00000563112 IGLV5-39A0A0G2JS06 123 aa10.16□□□□□ -0.78
CLK3-210ENST00000563112 ZNF22P17026 224 aaPredicted RBP10.16□□□□□ -0.78
CLK3-210ENST00000563112 BAGE3Q86Y29 109 aa10.16□□□□□ -0.78
CLK3-210ENST00000563112 LRP2P98164 4655 aa10.15□□□□□ -0.78
CLK3-210ENST00000563112 NKAPP1Q8N9T2 125 aa10.15□□□□□ -0.78
CLK3-210ENST00000563112 LINC00167Q96N53 147 aa10.15□□□□□ -0.78
CLK3-210ENST00000563112 PFN2P35080 140 aa10.14□□□□□ -0.79
CLK3-210ENST00000563112 RPL28P46779 137 aaKnown RBP10.14□□□□□ -0.79
CLK3-210ENST00000563112 HIST1H2BLQ99880 126 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 338.8 ms