RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 C6orf48Q9UBA6 75 aa13.95□□□□□ -0.18
SNX1-210ENST00000560260 FAT1Q14517 4588 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 F8WDY8 70 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 PRSS2P07478 247 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 C3orf79P0CE67 100 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 XGP55808 180 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 COX7B2Q8TF08 81 aa13.94□□□□□ -0.18
SNX1-210ENST00000560260 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.94□□□□□ -0.18
SNX1-210ENST00000560260 TMEM223A0PJW6 202 aa13.93□□□□□ -0.18
SNX1-210ENST00000560260 CDK2AP2O75956 126 aa13.93□□□□□ -0.18
SNX1-210ENST00000560260 CHTF8P0CG12 524 aa13.92□□□□□ -0.18
SNX1-210ENST00000560260 DPM2O94777 84 aa13.91□□□□□ -0.18
SNX1-210ENST00000560260 S100A6P06703 90 aa13.91□□□□□ -0.18
SNX1-210ENST00000560260 C6orf226Q5I0X4 101 aa13.91□□□□□ -0.18
SNX1-210ENST00000560260 RNF151Q2KHN1 245 aa13.9□□□□□ -0.18
SNX1-210ENST00000560260 LINC01545Q5VT33 79 aa13.9□□□□□ -0.18
SNX1-210ENST00000560260 HIST1H2BLQ99880 126 aa13.9□□□□□ -0.18
SNX1-210ENST00000560260 A0A096LNI7 61 aa13.9□□□□□ -0.19
SNX1-210ENST00000560260 PLNP26678 52 aa13.9□□□□□ -0.19
SNX1-210ENST00000560260 KRTDAPP60985 99 aa13.9□□□□□ -0.19
SNX1-210ENST00000560260 SNRPEP62304 92 aaKnown RBP13.9□□□□□ -0.19
SNX1-210ENST00000560260 PET117Q6UWS5 81 aa13.9□□□□□ -0.19
SNX1-210ENST00000560260 IGKCP01834 107 aa13.89□□□□□ -0.19
SNX1-210ENST00000560260 CKS1BP61024 79 aa13.89□□□□□ -0.19
SNX1-210ENST00000560260 CIRBPQ14011 172 aaKnown RBP13.89□□□□□ -0.19
SNX1-210ENST00000560260 C9orf116Q5BN46 136 aaPredicted RBP13.89□□□□□ -0.19
SNX1-210ENST00000560260 TRBV30A0A0K0K1B3 111 aa13.88□□□□□ -0.19
SNX1-210ENST00000560260 C5orf52A6NGY3 159 aa13.88□□□□□ -0.19
SNX1-210ENST00000560260 SCXQ7RTU7 201 aa13.88□□□□□ -0.19
SNX1-210ENST00000560260 KRTAP17-1Q9BYP8 105 aa13.88□□□□□ -0.19
SNX1-210ENST00000560260 IGKV2-24A0A0C4DH68 120 aa13.87□□□□□ -0.19
SNX1-210ENST00000560260 CXCL5P42830 114 aa13.87□□□□□ -0.19
SNX1-210ENST00000560260 SPACA4Q8TDM5 124 aa13.87□□□□□ -0.19
SNX1-210ENST00000560260 LOC107984640A0A0U1RRK4 108 aa13.86□□□□□ -0.19
SNX1-210ENST00000560260 S100A2P29034 98 aa13.86□□□□□ -0.19
SNX1-210ENST00000560260 CIRBP-AS1Q8TBR5 109 aa13.85□□□□□ -0.19
SNX1-210ENST00000560260 TLX1NBP0CAT3 122 aa13.84□□□□□ -0.19
SNX1-210ENST00000560260 PTTG1IPP53801 180 aa13.84□□□□□ -0.19
SNX1-210ENST00000560260 RPL18AQ02543 176 aaKnown RBP13.84□□□□□ -0.19
SNX1-210ENST00000560260 GAGE2BQ13066 116 aa13.84□□□□□ -0.19
SNX1-210ENST00000560260 Q6ZRP5 223 aa13.84□□□□□ -0.19
SNX1-210ENST00000560260 TSPEAR-AS2P59090 65 aa13.83□□□□□ -0.2
SNX1-210ENST00000560260 ZNF625Q96I27 306 aaPredicted RBP13.82□□□□□ -0.2
SNX1-210ENST00000560260 MAJINQ3KP22 176 aa13.81□□□□□ -0.2
SNX1-210ENST00000560260 PKIGQ9Y2B9 76 aa13.81□□□□□ -0.2
SNX1-210ENST00000560260 A0A087WYN8 130 aa13.79□□□□□ -0.2
SNX1-210ENST00000560260 NDUFC2-KCTD14E9PQ53 114 aa13.79□□□□□ -0.2
SNX1-210ENST00000560260 LEPROTO15243 131 aa13.78□□□□□ -0.2
SNX1-210ENST00000560260 TMA7Q9Y2S6 64 aaKnown RBP13.78□□□□□ -0.2
SNX1-210ENST00000560260 SMR3BP02814 79 aaPredicted RBP13.77□□□□□ -0.21
SNX1-210ENST00000560260 HERVK_113P61574 105 aa13.77□□□□□ -0.21
SNX1-210ENST00000560260 GAGE2EQ4V326 116 aa13.77□□□□□ -0.21
SNX1-210ENST00000560260 GAGE2DQ9UEU5 116 aa13.77□□□□□ -0.21
SNX1-210ENST00000560260 C20orf202A1L168 122 aa13.76□□□□□ -0.21
SNX1-210ENST00000560260 STPG4Q8N801 248 aa13.76□□□□□ -0.21
SNX1-210ENST00000560260 PLAC8Q9NZF1 115 aa13.76□□□□□ -0.21
SNX1-210ENST00000560260 ATOH7Q8N100 152 aa13.75□□□□□ -0.21
SNX1-210ENST00000560260 LINC00474Q9P2X8 69 aa13.75□□□□□ -0.21
SNX1-210ENST00000560260 A0A1W2PNN7 141 aa13.74□□□□□ -0.21
SNX1-210ENST00000560260 E9PLD3 99 aa13.74□□□□□ -0.21
SNX1-210ENST00000560260 C9orf129Q5T035 196 aaKnown RBP13.74□□□□□ -0.21
SNX1-210ENST00000560260 PLEKHB2Q96CS7 222 aa13.74□□□□□ -0.21
SNX1-210ENST00000560260 J3QQQ9 107 aa13.73□□□□□ -0.21
SNX1-210ENST00000560260 DPH3Q96FX2 82 aa13.73□□□□□ -0.21
SNX1-210ENST00000560260 NDUFA12Q9UI09 145 aa13.73□□□□□ -0.21
SNX1-210ENST00000560260 ERG28Q9UKR5 140 aa13.72□□□□□ -0.21
SNX1-210ENST00000560260 ABCA13Q86UQ4 5058 aa13.72□□□□□ -0.21
SNX1-210ENST00000560260 IGKV2D-26A0A0A0MRZ7 120 aa13.71□□□□□ -0.21
SNX1-210ENST00000560260 FAM168BA1KXE4 195 aa13.71□□□□□ -0.21
SNX1-210ENST00000560260 SFTA2Q6UW10 78 aa13.71□□□□□ -0.21
SNX1-210ENST00000560260 XAGE1AQ9HD64 81 aa13.71□□□□□ -0.21
SNX1-210ENST00000560260 EPM2AB3EWF7 344 aa13.7□□□□□ -0.22
SNX1-210ENST00000560260 PFN2P35080 140 aa13.7□□□□□ -0.22
SNX1-210ENST00000560260 KRTAP7-1Q8IUC3 87 aa13.7□□□□□ -0.22
SNX1-210ENST00000560260 ANKRD39Q53RE8 183 aa13.69□□□□□ -0.22
SNX1-210ENST00000560260 Q8N1X5 172 aa13.69□□□□□ -0.22
SNX1-210ENST00000560260 LGALS3P17931 250 aaKnown RBP13.68□□□□□ -0.22
SNX1-210ENST00000560260 LINC00528Q8N1L1 170 aa13.68□□□□□ -0.22
SNX1-210ENST00000560260 VPS13BQ7Z7G8 4022 aa13.68□□□□□ -0.22
SNX1-210ENST00000560260 MYMXA0A1B0GTQ4 84 aa13.67□□□□□ -0.22
SNX1-210ENST00000560260 HERV-K104P63124 156 aa13.66□□□□□ -0.22
SNX1-210ENST00000560260 KRTAP4-5Q9BYR2 181 aa13.66□□□□□ -0.22
SNX1-210ENST00000560260 A0A0U1RRA0 63 aa13.65□□□□□ -0.22
SNX1-210ENST00000560260 TTTY13Q9BZ97 58 aa13.65□□□□□ -0.22
SNX1-210ENST00000560260 SMIM13P0DJ93 91 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 NMUP48645 174 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 COX17Q14061 63 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 SERTAD4-AS1Q5TG53 156 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 Q5VSD8 79 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 FAM19A5Q7Z5A7 132 aaPredicted RBP13.64□□□□□ -0.23
SNX1-210ENST00000560260 MEIG1Q5JSS6 88 aa13.64□□□□□ -0.23
SNX1-210ENST00000560260 AKR1D1P51857 326 aa13.63□□□□□ -0.23
SNX1-210ENST00000560260 SND1-IT1Q9HBX3 110 aa13.63□□□□□ -0.23
SNX1-210ENST00000560260 SCGB1D1O95968 90 aa13.62□□□□□ -0.23
SNX1-210ENST00000560260 LINC00158P58513 81 aa13.62□□□□□ -0.23
SNX1-210ENST00000560260 PHF5AQ7RTV0 110 aaKnown RBP13.62□□□□□ -0.23
SNX1-210ENST00000560260 A0A0J9YXY3 114 aa13.6□□□□□ -0.23
SNX1-210ENST00000560260 KRTAP10-4P60372 401 aaPredicted RBP13.6□□□□□ -0.23
SNX1-210ENST00000560260 Q8NDZ9 215 aa13.6□□□□□ -0.23
SNX1-210ENST00000560260 MIR7-3HGQ8N6C7 128 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms