RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 Q8IZM0 81 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 LINC00469Q8N7U9 141 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 FAT3Q8TDW7 4589 aa12.74□□□□□ -0.37
FOXA1-203ENST00000553751 KRTAP29-1A8MX34 341 aaPredicted RBP12.73□□□□□ -0.37
FOXA1-203ENST00000553751 PRSS2P07478 247 aa12.73□□□□□ -0.37
FOXA1-203ENST00000553751 RAB5BP61020 215 aa12.73□□□□□ -0.37
FOXA1-203ENST00000553751 PACRGQ96M98 296 aaPredicted RBP12.73□□□□□ -0.37
FOXA1-203ENST00000553751 TOMM7Q9P0U1 55 aa12.73□□□□□ -0.37
FOXA1-203ENST00000553751 C9orf116Q5BN46 136 aaPredicted RBP12.72□□□□□ -0.37
FOXA1-203ENST00000553751 PDZD11Q5EBL8 140 aa12.72□□□□□ -0.37
FOXA1-203ENST00000553751 SMIM1B2RUZ4 78 aa12.71□□□□□ -0.37
FOXA1-203ENST00000553751 PRR3P79522 188 aaKnown RBP12.71□□□□□ -0.37
FOXA1-203ENST00000553751 CKS1BP61024 79 aa12.7□□□□□ -0.38
FOXA1-203ENST00000553751 C6orf226Q5I0X4 101 aa12.7□□□□□ -0.38
FOXA1-203ENST00000553751 NDUFC2-KCTD14E9PQ53 114 aa12.68□□□□□ -0.38
FOXA1-203ENST00000553751 J3QL48 77 aa12.68□□□□□ -0.38
FOXA1-203ENST00000553751 IGLC3P0DOY3 106 aa12.68□□□□□ -0.38
FOXA1-203ENST00000553751 GAGE2EQ4V326 116 aa12.68□□□□□ -0.38
FOXA1-203ENST00000553751 GAGE2DQ9UEU5 116 aa12.68□□□□□ -0.38
FOXA1-203ENST00000553751 CHCHD1Q96BP2 118 aaKnown RBP12.67□□□□□ -0.38
FOXA1-203ENST00000553751 FAM168BA1KXE4 195 aa12.66□□□□□ -0.38
FOXA1-203ENST00000553751 ATP5LO75964 103 aa12.66□□□□□ -0.38
FOXA1-203ENST00000553751 OXTP01178 125 aa12.66□□□□□ -0.38
FOXA1-203ENST00000553751 SPINK8P0C7L1 97 aa12.66□□□□□ -0.38
FOXA1-203ENST00000553751 NDUFA6P56556 154 aa12.66□□□□□ -0.38
FOXA1-203ENST00000553751 F8VRH5 84 aa12.65□□□□□ -0.38
FOXA1-203ENST00000553751 TRGC2P03986 189 aa12.65□□□□□ -0.38
FOXA1-203ENST00000553751 CXCL5P42830 114 aa12.65□□□□□ -0.38
FOXA1-203ENST00000553751 COX7B2Q8TF08 81 aa12.65□□□□□ -0.38
FOXA1-203ENST00000553751 H3BRM9 83 aa12.63□□□□□ -0.39
FOXA1-203ENST00000553751 C9orf129Q5T035 196 aaKnown RBP12.63□□□□□ -0.39
FOXA1-203ENST00000553751 PHF5AQ7RTV0 110 aaKnown RBP12.63□□□□□ -0.39
FOXA1-203ENST00000553751 ZNF22P17026 224 aaPredicted RBP12.62□□□□□ -0.39
FOXA1-203ENST00000553751 FAM19A5Q7Z5A7 132 aaPredicted RBP12.62□□□□□ -0.39
FOXA1-203ENST00000553751 KRTAP7-1Q8IUC3 87 aa12.62□□□□□ -0.39
FOXA1-203ENST00000553751 COLCA2A8K830 154 aa12.61□□□□□ -0.39
FOXA1-203ENST00000553751 BAGE3Q86Y29 109 aa12.61□□□□□ -0.39
FOXA1-203ENST00000553751 IGLV5-39A0A0G2JS06 123 aa12.6□□□□□ -0.39
FOXA1-203ENST00000553751 C11orf86A6NJI1 115 aa12.59□□□□□ -0.39
FOXA1-203ENST00000553751 HSBP1O75506 76 aa12.58□□□□□ -0.4
FOXA1-203ENST00000553751 LINC00310P59036 64 aa12.58□□□□□ -0.4
FOXA1-203ENST00000553751 PSORS1C2Q9UIG4 136 aa12.58□□□□□ -0.4
FOXA1-203ENST00000553751 FAM19A2Q8N3H0 131 aa12.57□□□□□ -0.4
FOXA1-203ENST00000553751 IFI27L1Q96BM0 104 aa12.57□□□□□ -0.4
FOXA1-203ENST00000553751 TRAV12-1A0A0B4J245 112 aa12.56□□□□□ -0.4
FOXA1-203ENST00000553751 M0QXV9 152 aa12.56□□□□□ -0.4
FOXA1-203ENST00000553751 KRTAP11-1Q8IUC1 163 aa12.56□□□□□ -0.4
FOXA1-203ENST00000553751 XAGE1AQ9HD64 81 aa12.56□□□□□ -0.4
FOXA1-203ENST00000553751 CHTOPQ9Y3Y2 248 aaKnown RBP12.56□□□□□ -0.4
FOXA1-203ENST00000553751 SERF1AO75920 110 aa12.55□□□□□ -0.4
FOXA1-203ENST00000553751 SRSF9Q13242 221 aaKnown RBP eCLIP12.54□□□□□ -0.4
FOXA1-203ENST00000553751 SERTAD4-AS1Q5TG53 156 aa12.54□□□□□ -0.4
FOXA1-203ENST00000553751 SPINK6Q6UWN8 80 aa12.54□□□□□ -0.4
FOXA1-203ENST00000553751 SCO1O75880 301 aa12.53□□□□□ -0.4
FOXA1-203ENST00000553751 TMEM170BQ5T4T1 132 aa12.53□□□□□ -0.4
FOXA1-203ENST00000553751 MT1HL1P0DM35 61 aa12.51□□□□□ -0.41
FOXA1-203ENST00000553751 C1orf137Q5JT78 98 aa12.51□□□□□ -0.41
FOXA1-203ENST00000553751 NUPR1O60356 82 aa12.5□□□□□ -0.41
FOXA1-203ENST00000553751 TMEM223A0PJW6 202 aa12.48□□□□□ -0.41
FOXA1-203ENST00000553751 LEPROTL1O95214 131 aa12.48□□□□□ -0.41
FOXA1-203ENST00000553751 UBE2BP63146 152 aa12.48□□□□□ -0.41
FOXA1-203ENST00000553751 C22orf24Q9Y442 160 aa12.48□□□□□ -0.41
FOXA1-203ENST00000553751 TNXBP22105 4242 aa12.47□□□□□ -0.41
FOXA1-203ENST00000553751 IGLV7-43P04211 117 aa12.46□□□□□ -0.41
FOXA1-203ENST00000553751 ODF1Q14990 250 aa12.46□□□□□ -0.41
FOXA1-203ENST00000553751 H0Y8G0 127 aa12.45□□□□□ -0.42
FOXA1-203ENST00000553751 ZNF625Q96I27 306 aaPredicted RBP12.45□□□□□ -0.42
FOXA1-203ENST00000553751 LINC01600Q96MT4 127 aa12.45□□□□□ -0.42
FOXA1-203ENST00000553751 ERG28Q9UKR5 140 aa12.45□□□□□ -0.42
FOXA1-203ENST00000553751 PFN2P35080 140 aa12.44□□□□□ -0.42
FOXA1-203ENST00000553751 SFTA2Q6UW10 78 aa12.44□□□□□ -0.42
FOXA1-203ENST00000553751 REG3GQ6UW15 175 aa12.44□□□□□ -0.42
FOXA1-203ENST00000553751 TP73-AS1Q9UF72 201 aa12.44□□□□□ -0.42
FOXA1-203ENST00000553751 PLA2G2DQ9UNK4 145 aa12.44□□□□□ -0.42
FOXA1-203ENST00000553751 HMCN2Q8NDA2 5059 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BKO60814 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BJP06899 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BOP23527 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BBP33778 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BDP58876 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BCP62807 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST2H2BEQ16778 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BHQ93079 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BNQ99877 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 HIST1H2BMQ99879 126 aa12.43□□□□□ -0.42
FOXA1-203ENST00000553751 FABP4P15090 132 aa12.42□□□□□ -0.42
FOXA1-203ENST00000553751 LBHQ53QV2 105 aaPredicted RBP12.42□□□□□ -0.42
FOXA1-203ENST00000553751 MRPL55Q7Z7F7 128 aaKnown RBP12.42□□□□□ -0.42
FOXA1-203ENST00000553751 HSPB8Q9UJY1 196 aa12.42□□□□□ -0.42
FOXA1-203ENST00000553751 COX17Q14061 63 aa12.41□□□□□ -0.42
FOXA1-203ENST00000553751 IGLV5-37A0A075B6J1 123 aa12.4□□□□□ -0.42
FOXA1-203ENST00000553751 SND1-IT1Q9HBX3 110 aa12.39□□□□□ -0.43
FOXA1-203ENST00000553751 PLNP26678 52 aa12.37□□□□□ -0.43
FOXA1-203ENST00000553751 DIRC1Q969H9 104 aa12.37□□□□□ -0.43
FOXA1-203ENST00000553751 LINC00167Q96N53 147 aa12.37□□□□□ -0.43
FOXA1-203ENST00000553751 H0Y9J4 135 aa12.36□□□□□ -0.43
FOXA1-203ENST00000553751 PMCHL2Q9BQD1 86 aa12.36□□□□□ -0.43
FOXA1-203ENST00000553751 GAGE10A6NGK3 116 aa12.35□□□□□ -0.43
FOXA1-203ENST00000553751 NKAPP1Q8N9T2 125 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms