RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DEFB130BP0DP73 79 aa12.17□□□□□ -0.46
SYNE3-202ENST00000553340 DEFB130AP0DP74 79 aa12.17□□□□□ -0.46
SYNE3-202ENST00000553340 ABCA12Q86UK0 2595 aa12.17□□□□□ -0.46
SYNE3-202ENST00000553340 SETXQ7Z333 2677 aaKnown RBP12.16□□□□□ -0.46
SYNE3-202ENST00000553340 CCKP06307 115 aa12.16□□□□□ -0.46
SYNE3-202ENST00000553340 A0A1B0GUV1 79 aa12.16□□□□□ -0.46
SYNE3-202ENST00000553340 LINC01561Q8N1V8 128 aa12.16□□□□□ -0.46
SYNE3-202ENST00000553340 PRB1P04280 392 aa12.15□□□□□ -0.46
SYNE3-202ENST00000553340 GYPEP15421 78 aa12.15□□□□□ -0.46
SYNE3-202ENST00000553340 KRTAP1-3Q8IUG1 177 aa12.15□□□□□ -0.46
SYNE3-202ENST00000553340 LINC00167Q96N53 147 aa12.15□□□□□ -0.46
SYNE3-202ENST00000553340 SONP18583 2426 aaKnown RBP12.15□□□□□ -0.46
SYNE3-202ENST00000553340 JMJD7-PLA2G4BH0Y9G9 81 aa12.15□□□□□ -0.46
SYNE3-202ENST00000553340 A0A087WVE0 104 aa12.14□□□□□ -0.47
SYNE3-202ENST00000553340 hADV29S1A0JD25 119 aa12.14□□□□□ -0.47
SYNE3-202ENST00000553340 CUBNO60494 3623 aa12.14□□□□□ -0.47
SYNE3-202ENST00000553340 SERP2Q8N6R1 65 aa12.14□□□□□ -0.47
SYNE3-202ENST00000553340 KIR2DL5BQ8NHK3 375 aa12.14□□□□□ -0.47
SYNE3-202ENST00000553340 Q8N814 137 aa12.13□□□□□ -0.47
SYNE3-202ENST00000553340 LINC01006Q8NI28 216 aa12.13□□□□□ -0.47
SYNE3-202ENST00000553340 S100A7L2Q5SY68 101 aa12.13□□□□□ -0.47
SYNE3-202ENST00000553340 CLPSL2Q6UWE3 100 aa12.13□□□□□ -0.47
SYNE3-202ENST00000553340 NANOS2P60321 138 aaKnown RBP12.12□□□□□ -0.47
SYNE3-202ENST00000553340 USP17L23D6RBM5 183 aa12.12□□□□□ -0.47
SYNE3-202ENST00000553340 TMEM256-PLSCR3K7ERE1 68 aa12.12□□□□□ -0.47
SYNE3-202ENST00000553340 PRR3P79522 188 aaKnown RBP12.12□□□□□ -0.47
SYNE3-202ENST00000553340 J3KT08 172 aa12.11□□□□□ -0.47
SYNE3-202ENST00000553340 NDUFC2O95298 119 aa12.11□□□□□ -0.47
SYNE3-202ENST00000553340 NF1P21359 2839 aa12.11□□□□□ -0.47
SYNE3-202ENST00000553340 ZNF462Q96JM2 2506 aa12.1□□□□□ -0.47
SYNE3-202ENST00000553340 COX17Q14061 63 aa12.1□□□□□ -0.47
SYNE3-202ENST00000553340 LINC00612Q8N6U2 182 aa12.1□□□□□ -0.47
SYNE3-202ENST00000553340 LOC107984640A0A0U1RRK4 108 aa12.09□□□□□ -0.47
SYNE3-202ENST00000553340 CFAP161Q6P656 301 aa12.09□□□□□ -0.47
SYNE3-202ENST00000553340 NIPBLQ6KC79 2804 aaeCLIP12.09□□□□□ -0.47
SYNE3-202ENST00000553340 C16orf95Q9H693 158 aa12.08□□□□□ -0.47
SYNE3-202ENST00000553340 ATP5EP2Q5VTU8 51 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 WFDC11Q8NEX6 87 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 CYSTM1Q9H1C7 97 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 PRO0255Q9UI72 69 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 A0A096LPF7 62 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 KIAA0087Q14695 138 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 SETD2Q9BYW2 2564 aaPredicted RBP12.07□□□□□ -0.48
SYNE3-202ENST00000553340 NBPF19A0A087WUL8 3843 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 CD164L2Q6UWJ8 174 aa12.07□□□□□ -0.48
SYNE3-202ENST00000553340 UPK3BQ9BT76 320 aa12.06□□□□□ -0.48
SYNE3-202ENST00000553340 RPS28P62857 69 aaKnown RBP12.06□□□□□ -0.48
SYNE3-202ENST00000553340 LINC00269Q8N2A0 174 aa12.06□□□□□ -0.48
SYNE3-202ENST00000553340 BBC3Q96PG8 261 aaPredicted RBP12.06□□□□□ -0.48
SYNE3-202ENST00000553340 ZNF469Q96JG9 3925 aaPredicted RBP12.05□□□□□ -0.48
SYNE3-202ENST00000553340 TMEM258P61165 79 aa12.05□□□□□ -0.48
SYNE3-202ENST00000553340 ITPR3Q14573 2671 aa12.05□□□□□ -0.48
SYNE3-202ENST00000553340 RNASE1P07998 156 aaKnown RBP12.05□□□□□ -0.48
SYNE3-202ENST00000553340 IGHV4-28A0A0C4DH34 117 aa12.04□□□□□ -0.48
SYNE3-202ENST00000553340 C6orf99Q4VX62 202 aa12.04□□□□□ -0.48
SYNE3-202ENST00000553340 CHCHD10Q8WYQ3 142 aaPredicted RBP12.04□□□□□ -0.48
SYNE3-202ENST00000553340 UBR5O95071 2799 aaPredicted RBP12.03□□□□□ -0.48
SYNE3-202ENST00000553340 ZFYVE26Q68DK2 2539 aa12.03□□□□□ -0.48
SYNE3-202ENST00000553340 C9orf116Q5BN46 136 aaPredicted RBP12.02□□□□□ -0.49
SYNE3-202ENST00000553340 UBL5Q9BZL1 73 aa12.02□□□□□ -0.49
SYNE3-202ENST00000553340 USP24Q9UPU5 2620 aa12.02□□□□□ -0.49
SYNE3-202ENST00000553340 IGLV10-54A0A075B6I4 117 aa12.01□□□□□ -0.49
SYNE3-202ENST00000553340 HILS1P60008 231 aa12.01□□□□□ -0.49
SYNE3-202ENST00000553340 LYPD5Q6UWN5 251 aa12.01□□□□□ -0.49
SYNE3-202ENST00000553340 X6R8D5 127 aa12.01□□□□□ -0.49
SYNE3-202ENST00000553340 ANGP03950 147 aaKnown RBP12.01□□□□□ -0.49
SYNE3-202ENST00000553340 SMIM9A6NGZ8 99 aa12□□□□□ -0.49
SYNE3-202ENST00000553340 REG3AQ06141 175 aa12□□□□□ -0.49
SYNE3-202ENST00000553340 FAM19A5Q7Z5A7 132 aaPredicted RBP12□□□□□ -0.49
SYNE3-202ENST00000553340 CCDC168Q8NDH2 2452 aa12□□□□□ -0.49
SYNE3-202ENST00000553340 LINC00575Q6W349 94 aa12□□□□□ -0.49
SYNE3-202ENST00000553340 WFDC9Q8NEX5 89 aa12□□□□□ -0.49
SYNE3-202ENST00000553340 APCP25054 2843 aa11.99□□□□□ -0.49
SYNE3-202ENST00000553340 ENHOQ6UWT2 76 aa11.99□□□□□ -0.49
SYNE3-202ENST00000553340 FN1P02751 2386 aaKnown RBP11.99□□□□□ -0.49
SYNE3-202ENST00000553340 ZNF843Q8N446 348 aa11.99□□□□□ -0.49
SYNE3-202ENST00000553340 TRBV10-3A0A0K0K1G6 114 aa11.98□□□□□ -0.49
SYNE3-202ENST00000553340 GHRHP01286 108 aa11.98□□□□□ -0.49
SYNE3-202ENST00000553340 TRAV23DV6A0A075B6W5 121 aa11.98□□□□□ -0.49
SYNE3-202ENST00000553340 FAM19A1Q7Z5A9 133 aa11.98□□□□□ -0.49
SYNE3-202ENST00000553340 Q8NDZ9 215 aa11.98□□□□□ -0.49
SYNE3-202ENST00000553340 DPH3Q96FX2 82 aa11.97□□□□□ -0.49
SYNE3-202ENST00000553340 RBM3P98179 157 aaKnown RBP11.97□□□□□ -0.49
SYNE3-202ENST00000553340 FLNAP21333 2647 aaKnown RBP11.96□□□□□ -0.49
SYNE3-202ENST00000553340 LYRM9A8MSI8 78 aa11.96□□□□□ -0.5
SYNE3-202ENST00000553340 Q8N3U1 123 aa11.96□□□□□ -0.5
SYNE3-202ENST00000553340 ZNF561-AS1K7EIQ3 104 aa11.95□□□□□ -0.5
SYNE3-202ENST00000553340 Q6ZQT0 140 aa11.94□□□□□ -0.5
SYNE3-202ENST00000553340 MUC7Q8TAX7 377 aa11.94□□□□□ -0.5
SYNE3-202ENST00000553340 LAMTOR3Q9UHA4 124 aa11.94□□□□□ -0.5
SYNE3-202ENST00000553340 LOC110117498A0A087WWA1 95 aa11.93□□□□□ -0.5
SYNE3-202ENST00000553340 KRTAP1-1Q07627 177 aa11.93□□□□□ -0.5
SYNE3-202ENST00000553340 SPAG11BQ08648 103 aa11.92□□□□□ -0.5
SYNE3-202ENST00000553340 UNQ6190/PRO20217Q6UXQ8 127 aa11.92□□□□□ -0.5
SYNE3-202ENST00000553340 C10orf25Q5T742 122 aa11.92□□□□□ -0.5
SYNE3-202ENST00000553340 C6orf223Q8N319 242 aa11.91□□□□□ -0.5
SYNE3-202ENST00000553340 DSCR8Q96T75 97 aa11.91□□□□□ -0.5
SYNE3-202ENST00000553340 DEFB4AO15263 64 aa11.9□□□□□ -0.51
SYNE3-202ENST00000553340 IGLV6-57P01721 117 aa11.9□□□□□ -0.51
SYNE3-202ENST00000553340 LINC00482Q8N8I6 264 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms