RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 LINC00614P0C842 121 aa11.68□□□□□ -0.54
HDAC4-217ENST00000553145 CBLN2Q8IUK8 224 aa11.68□□□□□ -0.54
HDAC4-217ENST00000553145 Q8IZM0 81 aa11.68□□□□□ -0.54
HDAC4-217ENST00000553145 SLC7A5P1Q8MH63 180 aa11.68□□□□□ -0.54
HDAC4-217ENST00000553145 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
HDAC4-217ENST00000553145 PMVKQ15126 192 aa11.67□□□□□ -0.54
HDAC4-217ENST00000553145 PMCHL1Q16048 86 aa11.67□□□□□ -0.54
HDAC4-217ENST00000553145 LINC00469Q8N7U9 141 aa11.67□□□□□ -0.54
HDAC4-217ENST00000553145 PACRGQ96M98 296 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-217ENST00000553145 IGLV5-45A0A087WSX0 123 aa11.66□□□□□ -0.54
HDAC4-217ENST00000553145 FAM168BA1KXE4 195 aa11.66□□□□□ -0.54
HDAC4-217ENST00000553145 SMIM1B2RUZ4 78 aa11.66□□□□□ -0.54
HDAC4-217ENST00000553145 GAGE2EQ4V326 116 aa11.66□□□□□ -0.54
HDAC4-217ENST00000553145 GAGE2DQ9UEU5 116 aa11.66□□□□□ -0.54
HDAC4-217ENST00000553145 C6orf226Q5I0X4 101 aa11.65□□□□□ -0.54
HDAC4-217ENST00000553145 PHF5AQ7RTV0 110 aaKnown RBP11.65□□□□□ -0.54
HDAC4-217ENST00000553145 HBDP02042 147 aa11.64□□□□□ -0.55
HDAC4-217ENST00000553145 CKS1BP61024 79 aa11.64□□□□□ -0.55
HDAC4-217ENST00000553145 PDZD11Q5EBL8 140 aa11.64□□□□□ -0.55
HDAC4-217ENST00000553145 NDUFC2-KCTD14E9PQ53 114 aa11.63□□□□□ -0.55
HDAC4-217ENST00000553145 KRTAP7-1Q8IUC3 87 aa11.63□□□□□ -0.55
HDAC4-217ENST00000553145 SPINK8P0C7L1 97 aa11.61□□□□□ -0.55
HDAC4-217ENST00000553145 RAB5BP61020 215 aa11.61□□□□□ -0.55
HDAC4-217ENST00000553145 C9orf129Q5T035 196 aaKnown RBP11.61□□□□□ -0.55
HDAC4-217ENST00000553145 FAM19A5Q7Z5A7 132 aaPredicted RBP11.61□□□□□ -0.55
HDAC4-217ENST00000553145 F8VRH5 84 aa11.6□□□□□ -0.55
HDAC4-217ENST00000553145 IGLC3P0DOY3 106 aa11.6□□□□□ -0.55
HDAC4-217ENST00000553145 NDUFA6P56556 154 aa11.6□□□□□ -0.55
HDAC4-217ENST00000553145 COX7B2Q8TF08 81 aa11.6□□□□□ -0.55
HDAC4-217ENST00000553145 KRTAP11-1Q8IUC1 163 aa11.59□□□□□ -0.55
HDAC4-217ENST00000553145 PSORS1C2Q9UIG4 136 aa11.59□□□□□ -0.55
HDAC4-217ENST00000553145 MT1HL1P0DM35 61 aa11.58□□□□□ -0.56
HDAC4-217ENST00000553145 CXCL5P42830 114 aa11.58□□□□□ -0.56
HDAC4-217ENST00000553145 ATP5LO75964 103 aa11.57□□□□□ -0.56
HDAC4-217ENST00000553145 ZNF22P17026 224 aaPredicted RBP11.57□□□□□ -0.56
HDAC4-217ENST00000553145 SRSF9Q13242 221 aaKnown RBP eCLIP11.57□□□□□ -0.56
HDAC4-217ENST00000553145 CHCHD1Q96BP2 118 aaKnown RBP11.56□□□□□ -0.56
HDAC4-217ENST00000553145 H3BRM9 83 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 M0QXV9 152 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 TRGC2P03986 189 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 SPINK6Q6UWN8 80 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 BAGE3Q86Y29 109 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 XAGE1AQ9HD64 81 aa11.55□□□□□ -0.56
HDAC4-217ENST00000553145 SERTAD4-AS1Q5TG53 156 aa11.54□□□□□ -0.56
HDAC4-217ENST00000553145 IGLV5-39A0A0G2JS06 123 aa11.53□□□□□ -0.56
HDAC4-217ENST00000553145 C11orf86A6NJI1 115 aa11.53□□□□□ -0.56
HDAC4-217ENST00000553145 C1orf137Q5JT78 98 aa11.53□□□□□ -0.56
HDAC4-217ENST00000553145 COLCA2A8K830 154 aa11.5□□□□□ -0.57
HDAC4-217ENST00000553145 LINC00310P59036 64 aa11.5□□□□□ -0.57
HDAC4-217ENST00000553145 FAM19A2Q8N3H0 131 aa11.5□□□□□ -0.57
HDAC4-217ENST00000553145 IFI27L1Q96BM0 104 aa11.5□□□□□ -0.57
HDAC4-217ENST00000553145 CHTOPQ9Y3Y2 248 aaKnown RBP11.5□□□□□ -0.57
HDAC4-217ENST00000553145 HSBP1O75506 76 aa11.49□□□□□ -0.57
HDAC4-217ENST00000553145 LINC01600Q96MT4 127 aa11.49□□□□□ -0.57
HDAC4-217ENST00000553145 IGLV7-43P04211 117 aa11.48□□□□□ -0.57
HDAC4-217ENST00000553145 UBE2BP63146 152 aa11.48□□□□□ -0.57
HDAC4-217ENST00000553145 TMEM170BQ5T4T1 132 aa11.48□□□□□ -0.57
HDAC4-217ENST00000553145 TRAV12-1A0A0B4J245 112 aa11.47□□□□□ -0.57
HDAC4-217ENST00000553145 SERF1AO75920 110 aa11.47□□□□□ -0.57
HDAC4-217ENST00000553145 C22orf24Q9Y442 160 aa11.47□□□□□ -0.57
HDAC4-217ENST00000553145 REG3GQ6UW15 175 aa11.46□□□□□ -0.57
HDAC4-217ENST00000553145 TNXBP22105 4242 aa11.46□□□□□ -0.58
HDAC4-217ENST00000553145 HMCN2Q8NDA2 5059 aa11.45□□□□□ -0.58
HDAC4-217ENST00000553145 NUPR1O60356 82 aa11.44□□□□□ -0.58
HDAC4-217ENST00000553145 SCO1O75880 301 aa11.43□□□□□ -0.58
HDAC4-217ENST00000553145 PFN2P35080 140 aa11.43□□□□□ -0.58
HDAC4-217ENST00000553145 TMEM223A0PJW6 202 aa11.42□□□□□ -0.58
HDAC4-217ENST00000553145 ZNF625Q96I27 306 aaPredicted RBP11.42□□□□□ -0.58
HDAC4-217ENST00000553145 TP73-AS1Q9UF72 201 aa11.42□□□□□ -0.58
HDAC4-217ENST00000553145 ODF1Q14990 250 aa11.41□□□□□ -0.58
HDAC4-217ENST00000553145 MRPL55Q7Z7F7 128 aaKnown RBP11.41□□□□□ -0.58
HDAC4-217ENST00000553145 ERG28Q9UKR5 140 aa11.41□□□□□ -0.58
HDAC4-217ENST00000553145 PLA2G2DQ9UNK4 145 aa11.41□□□□□ -0.58
HDAC4-217ENST00000553145 LEPROTL1O95214 131 aa11.4□□□□□ -0.58
HDAC4-217ENST00000553145 KRTAP10-8P60410 259 aa11.4□□□□□ -0.58
HDAC4-217ENST00000553145 LBHQ53QV2 105 aaPredicted RBP11.4□□□□□ -0.58
HDAC4-217ENST00000553145 H0Y8G0 127 aa11.39□□□□□ -0.59
HDAC4-217ENST00000553145 IGLV5-37A0A075B6J1 123 aa11.38□□□□□ -0.59
HDAC4-217ENST00000553145 H0Y9J4 135 aa11.38□□□□□ -0.59
HDAC4-217ENST00000553145 DIRC1Q969H9 104 aa11.38□□□□□ -0.59
HDAC4-217ENST00000553145 LINC00167Q96N53 147 aa11.38□□□□□ -0.59
HDAC4-217ENST00000553145 SND1-IT1Q9HBX3 110 aa11.37□□□□□ -0.59
HDAC4-217ENST00000553145 GAGE10A6NGK3 116 aa11.36□□□□□ -0.59
HDAC4-217ENST00000553145 RPL37AP8A6NKH3 93 aa11.36□□□□□ -0.59
HDAC4-217ENST00000553145 FABP4P15090 132 aa11.36□□□□□ -0.59
HDAC4-217ENST00000553145 COX17Q14061 63 aa11.36□□□□□ -0.59
HDAC4-217ENST00000553145 SFTA2Q6UW10 78 aa11.35□□□□□ -0.59
HDAC4-217ENST00000553145 VPREB1P12018 145 aa11.34□□□□□ -0.59
HDAC4-217ENST00000553145 NKAPP1Q8N9T2 125 aa11.34□□□□□ -0.59
HDAC4-217ENST00000553145 Q8NDZ9 215 aa11.34□□□□□ -0.59
HDAC4-217ENST00000553145 HSPB8Q9UJY1 196 aa11.33□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BKO60814 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BJP06899 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 KRTAP1-4P0C5Y4 121 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BOP23527 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BBP33778 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BDP58876 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BCP62807 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST2H2BEQ16778 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms