RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 LINC00614P0C842 121 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 PMVKQ15126 192 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 C10orf25Q5T742 122 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 LINC00469Q8N7U9 141 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 CST9LQ9H4G1 147 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 CDKN2A-AS1Q9UH64 79 aa7.38□□□□□ -1.23
HDAC4-216ENST00000544989 HNRNPA3P51991 378 aaKnown RBP7.37□□□□□ -1.23
HDAC4-216ENST00000544989 PDZD11Q5EBL8 140 aa7.37□□□□□ -1.23
HDAC4-216ENST00000544989 C18orf32Q8TCD1 76 aa7.37□□□□□ -1.23
HDAC4-216ENST00000544989 TOMM7Q9P0U1 55 aa7.37□□□□□ -1.23
HDAC4-216ENST00000544989 IGLV5-45A0A087WSX0 123 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 A0A1W2PNN7 141 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 H3BRM9 83 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 HBDP02042 147 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 SPINK6Q6UWN8 80 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 C2orf82Q6UX34 121 aa7.36□□□□□ -1.23
HDAC4-216ENST00000544989 LRP2P98164 4655 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 F8VRH5 84 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 ATP5LO75964 103 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 GAGE2EQ4V326 116 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 SERTAD4-AS1Q5TG53 156 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 GAGE2DQ9UEU5 116 aa7.35□□□□□ -1.23
HDAC4-216ENST00000544989 ODF1Q14990 250 aa7.34□□□□□ -1.23
HDAC4-216ENST00000544989 REG3GQ6UW15 175 aa7.34□□□□□ -1.23
HDAC4-216ENST00000544989 SMIM1B2RUZ4 78 aa7.33□□□□□ -1.24
HDAC4-216ENST00000544989 COX7B2Q8TF08 81 aa7.33□□□□□ -1.24
HDAC4-216ENST00000544989 IGLC3P0DOY3 106 aa7.32□□□□□ -1.24
HDAC4-216ENST00000544989 NDUFA6P56556 154 aa7.32□□□□□ -1.24
HDAC4-216ENST00000544989 CHCHD1Q96BP2 118 aaKnown RBP7.32□□□□□ -1.24
HDAC4-216ENST00000544989 PHF5AQ7RTV0 110 aaKnown RBP7.31□□□□□ -1.24
HDAC4-216ENST00000544989 FAM19A5Q7Z5A7 132 aaPredicted RBP7.31□□□□□ -1.24
HDAC4-216ENST00000544989 YPEL4Q96NS1 127 aa7.31□□□□□ -1.24
HDAC4-216ENST00000544989 PSORS1C2Q9UIG4 136 aa7.31□□□□□ -1.24
HDAC4-216ENST00000544989 A0A096LNJ9 63 aa7.3□□□□□ -1.24
HDAC4-216ENST00000544989 M0QXV9 152 aa7.3□□□□□ -1.24
HDAC4-216ENST00000544989 SRSF9Q13242 221 aaKnown RBP eCLIP7.3□□□□□ -1.24
HDAC4-216ENST00000544989 SFTA2Q6UW10 78 aa7.3□□□□□ -1.24
HDAC4-216ENST00000544989 URB1-AS1Q96HZ7 61 aa7.3□□□□□ -1.24
HDAC4-216ENST00000544989 FAM168BA1KXE4 195 aa7.29□□□□□ -1.24
HDAC4-216ENST00000544989 SPINK8P0C7L1 97 aa7.29□□□□□ -1.24
HDAC4-216ENST00000544989 UBE2BP63146 152 aa7.29□□□□□ -1.24
HDAC4-216ENST00000544989 LBHQ53QV2 105 aaPredicted RBP7.29□□□□□ -1.24
HDAC4-216ENST00000544989 C1orf137Q5JT78 98 aa7.29□□□□□ -1.24
HDAC4-216ENST00000544989 C9orf129Q5T035 196 aaKnown RBP7.29□□□□□ -1.24
HDAC4-216ENST00000544989 LINC01600Q96MT4 127 aa7.29□□□□□ -1.24
HDAC4-216ENST00000544989 PMCHL1Q16048 86 aa7.28□□□□□ -1.24
HDAC4-216ENST00000544989 BAGE3Q86Y29 109 aa7.28□□□□□ -1.24
HDAC4-216ENST00000544989 CBLN2Q8IUK8 224 aa7.28□□□□□ -1.24
HDAC4-216ENST00000544989 TP73-AS1Q9UF72 201 aa7.28□□□□□ -1.24
HDAC4-216ENST00000544989 IGLV5-39A0A0G2JS06 123 aa7.27□□□□□ -1.25
HDAC4-216ENST00000544989 TRAV12-1A0A0B4J245 112 aa7.26□□□□□ -1.25
HDAC4-216ENST00000544989 HSBP1O75506 76 aa7.26□□□□□ -1.25
HDAC4-216ENST00000544989 IGLV7-43P04211 117 aa7.26□□□□□ -1.25
HDAC4-216ENST00000544989 MT1HL1P0DM35 61 aa7.26□□□□□ -1.25
HDAC4-216ENST00000544989 ZNF22P17026 224 aaPredicted RBP7.26□□□□□ -1.25
HDAC4-216ENST00000544989 DIRC1Q969H9 104 aa7.26□□□□□ -1.25
HDAC4-216ENST00000544989 TNXBP22105 4242 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 NUPR1O60356 82 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 COX17Q14061 63 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 TMEM170BQ5T4T1 132 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 IFI27L1Q96BM0 104 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 XAGE1AQ9HD64 81 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 PLA2G2DQ9UNK4 145 aa7.25□□□□□ -1.25
HDAC4-216ENST00000544989 CHTOPQ9Y3Y2 248 aaKnown RBP7.25□□□□□ -1.25
HDAC4-216ENST00000544989 TRGC2P03986 189 aa7.24□□□□□ -1.25
HDAC4-216ENST00000544989 KRTAP7-1Q8IUC3 87 aa7.24□□□□□ -1.25
HDAC4-216ENST00000544989 C22orf24Q9Y442 160 aa7.24□□□□□ -1.25
HDAC4-216ENST00000544989 C11orf86A6NJI1 115 aa7.23□□□□□ -1.25
HDAC4-216ENST00000544989 MRPL55Q7Z7F7 128 aaKnown RBP7.23□□□□□ -1.25
HDAC4-216ENST00000544989 SLC7A5P1Q8MH63 180 aa7.23□□□□□ -1.25
HDAC4-216ENST00000544989 H0Y9J4 135 aa7.21□□□□□ -1.26
HDAC4-216ENST00000544989 ATP6V1G1O75348 118 aa7.21□□□□□ -1.26
HDAC4-216ENST00000544989 NKAPP1Q8N9T2 125 aa7.21□□□□□ -1.26
HDAC4-216ENST00000544989 IGLV5-37A0A075B6J1 123 aa7.2□□□□□ -1.26
HDAC4-216ENST00000544989 LEPROTL1O95214 131 aa7.2□□□□□ -1.26
HDAC4-216ENST00000544989 HSPB8Q9UJY1 196 aa7.2□□□□□ -1.26
HDAC4-216ENST00000544989 ERG28Q9UKR5 140 aa7.2□□□□□ -1.26
HDAC4-216ENST00000544989 TMEM223A0PJW6 202 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 LINC00587B1AMM8 73 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 PFN2P35080 140 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 KRTAP10-8P60410 259 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 RPL24P83731 157 aaKnown RBP7.19□□□□□ -1.26
HDAC4-216ENST00000544989 KRTAP11-1Q8IUC1 163 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 FAM19A2Q8N3H0 131 aa7.19□□□□□ -1.26
HDAC4-216ENST00000544989 COLCA2A8K830 154 aa7.18□□□□□ -1.26
HDAC4-216ENST00000544989 ZNF861PO60384 105 aa7.18□□□□□ -1.26
HDAC4-216ENST00000544989 SERF1AO75920 110 aa7.18□□□□□ -1.26
HDAC4-216ENST00000544989 ZNF625Q96I27 306 aaPredicted RBP7.18□□□□□ -1.26
HDAC4-216ENST00000544989 IGLV1-50A0A075B6I6 118 aa7.17□□□□□ -1.26
HDAC4-216ENST00000544989 BCE1O60756 84 aa7.17□□□□□ -1.26
HDAC4-216ENST00000544989 PLNP26678 52 aa7.17□□□□□ -1.26
HDAC4-216ENST00000544989 RPL28P46779 137 aaKnown RBP7.17□□□□□ -1.26
HDAC4-216ENST00000544989 HERV-K104P63124 156 aa7.17□□□□□ -1.26
HDAC4-216ENST00000544989 LINC00167Q96N53 147 aa7.17□□□□□ -1.26
HDAC4-216ENST00000544989 SND1-IT1Q9HBX3 110 aa7.16□□□□□ -1.26
HDAC4-216ENST00000544989 RPL13AP40429 203 aaKnown RBP7.15□□□□□ -1.26
HDAC4-216ENST00000544989 LINC00158P58513 81 aa7.15□□□□□ -1.26
HDAC4-216ENST00000544989 MYMXA0A1B0GTQ4 84 aa7.14□□□□□ -1.27
HDAC4-216ENST00000544989 RPL37AP8A6NKH3 93 aa7.14□□□□□ -1.27
HDAC4-216ENST00000544989 H0Y8G0 127 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms