RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 UNQ6190/PRO20217Q6UXQ8 127 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 SMIM15Q7Z3B0 74 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 MRPL55Q7Z7F7 128 aaKnown RBP2.26□□□□□ -2.05
SNHG1-220ENST00000544550 GATD1Q8NB37 220 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 LINC00846Q9NV44 126 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 DHRS4-AS1Q9P1J3 65 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 C6orf48Q9UBA6 75 aa2.26□□□□□ -2.05
SNHG1-220ENST00000544550 IGLV8-61A0A075B6I0 122 aa2.25□□□□□ -2.05
SNHG1-220ENST00000544550 TRBV6-5A0A0K0K1A5 114 aa2.25□□□□□ -2.05
SNHG1-220ENST00000544550 INMT-MINDY4F8WBC2 141 aa2.25□□□□□ -2.05
SNHG1-220ENST00000544550 SPINK1P00995 79 aa2.25□□□□□ -2.05
SNHG1-220ENST00000544550 COX6B2Q6YFQ2 88 aa2.25□□□□□ -2.05
SNHG1-220ENST00000544550 RPL39LQ96EH5 51 aaKnown RBP2.25□□□□□ -2.05
SNHG1-220ENST00000544550 USH2AO75445 5202 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 IGHV3OR16-9A0A0B4J2B5 98 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 MAP1LC3B2A6NCE7 125 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 ZNF727A8MUV8 499 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 PLA2G10O15496 165 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 PFDN1O60925 122 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 UPK1BO75841 260 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 IFNA1P01562 189 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 H2BFSP57053 126 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 AKR1C8PQ5T2L2 129 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 LYZL1Q6UWQ5 148 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 KRTAP13-1Q8IUC0 172 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 C9orf62Q8N4C0 152 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 CNFNQ9BYD5 112 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 MAP1LC3BQ9GZQ8 125 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 ST20Q9HBF5 79 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 BIN3Q9NQY0 253 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 TMEM242Q9NWH2 141 aa2.24□□□□□ -2.05
SNHG1-220ENST00000544550 TGIF2-C20orf24A0A0A6YYL0 155 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 FCER1GP30273 86 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 RPS29P62273 56 aaKnown RBP2.23□□□□□ -2.05
SNHG1-220ENST00000544550 ZNF726P1Q15940 193 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 FAM74A3Q4VXF1 159 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 MTURNQ8N3F0 131 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 SMIM12Q96EX1 92 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 MARVELD1Q9BSK0 173 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 TIMM21Q9BVV7 248 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 GNB1LQ9BYB4 327 aa2.23□□□□□ -2.05
SNHG1-220ENST00000544550 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 BORCS7-ASMTA0A0B4J1R7 106 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 TRBV27A0A0K0K1C4 114 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 SLC25A20O43772 301 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 RPL35P42766 123 aaKnown RBP2.22□□□□□ -2.05
SNHG1-220ENST00000544550 FOXA3P55318 350 aaPredicted RBP2.22□□□□□ -2.05
SNHG1-220ENST00000544550 DSCR10P59022 87 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 CKS1BP61024 79 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 HBBP68871 147 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 KIAA0087Q14695 138 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 PCOTHQ58A44 107 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 RNASE13Q5GAN3 156 aaKnown RBP2.22□□□□□ -2.05
SNHG1-220ENST00000544550 Q6ZUT4 128 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 C3orf22Q8N5N4 141 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 LINC00167Q96N53 147 aa2.22□□□□□ -2.05
SNHG1-220ENST00000544550 KRTAP4-16G5E9R7 235 aaPredicted RBP2.21□□□□□ -2.06
SNHG1-220ENST00000544550 TCAPO15273 167 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 SSNA1O43805 119 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 PPP1R17O96001 155 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 POLR2KP53803 58 aaKnown RBP2.21□□□□□ -2.06
SNHG1-220ENST00000544550 DEFA1P59665 94 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 RPL32P62910 135 aaKnown RBP2.21□□□□□ -2.06
SNHG1-220ENST00000544550 Q1RN00 199 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 C2orf82Q6UX34 121 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 FAM19A1Q7Z5A9 133 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 LINC01561Q8N1V8 128 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 LINC00469Q8N7U9 141 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 NKAPP1Q8N9T2 125 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 ENKURQ8TC29 256 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 PLEKHB2Q96CS7 222 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 RNASE7Q9H1E1 156 aaKnown RBP2.21□□□□□ -2.06
SNHG1-220ENST00000544550 XAGE1AQ9HD64 81 aa2.21□□□□□ -2.06
SNHG1-220ENST00000544550 ZNF706Q9Y5V0 76 aaPredicted RBP2.21□□□□□ -2.06
SNHG1-220ENST00000544550 FCGBPQ9Y6R7 5405 aaPredicted RBP2.2□□□□□ -2.06
SNHG1-220ENST00000544550 PPP1R2P9O14990 202 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 GNG4P50150 75 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 PRLHP81277 87 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 MRPS36P82909 103 aaKnown RBP2.2□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP6-3Q3LI67 103 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 CENPWQ5EE01 88 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 C6orf226Q5I0X4 101 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 RPL7L1Q6DKI1 246 aaKnown RBP2.2□□□□□ -2.06
SNHG1-220ENST00000544550 CBLN2Q8IUK8 224 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 BORCS7Q96B45 105 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 GEMIN7Q9H840 131 aaKnown RBP2.2□□□□□ -2.06
SNHG1-220ENST00000544550 RPS10P5Q9NQ39 176 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 SPANXA1Q9NS26 97 aa2.2□□□□□ -2.06
SNHG1-220ENST00000544550 E9PLD3 99 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 TAGLN2P37802 199 aaKnown RBP2.19□□□□□ -2.06
SNHG1-220ENST00000544550 CXCL5P42830 114 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 CCL20P78556 96 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 C2orf66Q6UXQ4 117 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 Q6ZN92 141 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 LINC01551Q86U37 167 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 Q8IZM0 81 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 KCNRGQ8N5I3 272 aa2.19□□□□□ -2.06
SNHG1-220ENST00000544550 SPRR4Q96PI1 79 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms