RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 PHF5AQ7RTV0 110 aaKnown RBP12.97□□□□□ -0.33
VPS28-203ENST00000524521 Q8IZM0 81 aa12.97□□□□□ -0.33
VPS28-203ENST00000524521 LINC00469Q8N7U9 141 aa12.97□□□□□ -0.33
VPS28-203ENST00000524521 CST9LQ9H4G1 147 aa12.97□□□□□ -0.33
VPS28-203ENST00000524521 C18orf32Q8TCD1 76 aa12.96□□□□□ -0.33
VPS28-203ENST00000524521 TINCRA0A1B0GVN0 87 aa12.95□□□□□ -0.34
VPS28-203ENST00000524521 FAM168BA1KXE4 195 aa12.95□□□□□ -0.34
VPS28-203ENST00000524521 LINC00614P0C842 121 aa12.95□□□□□ -0.34
VPS28-203ENST00000524521 NDUFC2-KCTD14E9PQ53 114 aa12.94□□□□□ -0.34
VPS28-203ENST00000524521 PMVKQ15126 192 aa12.94□□□□□ -0.34
VPS28-203ENST00000524521 FAT3Q8TDW7 4589 aa12.93□□□□□ -0.34
VPS28-203ENST00000524521 FAM19A5Q7Z5A7 132 aaPredicted RBP12.93□□□□□ -0.34
VPS28-203ENST00000524521 URB1-AS1Q96HZ7 61 aa12.93□□□□□ -0.34
VPS28-203ENST00000524521 SPINK6Q6UWN8 80 aa12.92□□□□□ -0.34
VPS28-203ENST00000524521 PSORS1C2Q9UIG4 136 aa12.92□□□□□ -0.34
VPS28-203ENST00000524521 NDUFA6P56556 154 aa12.91□□□□□ -0.34
VPS28-203ENST00000524521 IGLV5-45A0A087WSX0 123 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 A0A096LNJ9 63 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 SMIM1B2RUZ4 78 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 MT1HL1P0DM35 61 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 SRSF9Q13242 221 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS28-203ENST00000524521 PDZD11Q5EBL8 140 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 SERTAD4-AS1Q5TG53 156 aa12.9□□□□□ -0.34
VPS28-203ENST00000524521 F8VRH5 84 aa12.89□□□□□ -0.35
VPS28-203ENST00000524521 RAB5BP61020 215 aa12.89□□□□□ -0.35
VPS28-203ENST00000524521 PMCHL1Q16048 86 aa12.89□□□□□ -0.35
VPS28-203ENST00000524521 C9orf129Q5T035 196 aaKnown RBP12.89□□□□□ -0.35
VPS28-203ENST00000524521 HBDP02042 147 aa12.88□□□□□ -0.35
VPS28-203ENST00000524521 SPINK8P0C7L1 97 aa12.88□□□□□ -0.35
VPS28-203ENST00000524521 C1orf137Q5JT78 98 aa12.88□□□□□ -0.35
VPS28-203ENST00000524521 COX7B2Q8TF08 81 aa12.88□□□□□ -0.35
VPS28-203ENST00000524521 YPEL4Q96NS1 127 aa12.88□□□□□ -0.35
VPS28-203ENST00000524521 CXCL5P42830 114 aa12.87□□□□□ -0.35
VPS28-203ENST00000524521 KRTAP7-1Q8IUC3 87 aa12.87□□□□□ -0.35
VPS28-203ENST00000524521 REG3GQ6UW15 175 aa12.86□□□□□ -0.35
VPS28-203ENST00000524521 H3BRM9 83 aa12.85□□□□□ -0.35
VPS28-203ENST00000524521 M0QXV9 152 aa12.85□□□□□ -0.35
VPS28-203ENST00000524521 LINC01600Q96MT4 127 aa12.85□□□□□ -0.35
VPS28-203ENST00000524521 KRTAP11-1Q8IUC1 163 aa12.84□□□□□ -0.35
VPS28-203ENST00000524521 CBLN2Q8IUK8 224 aa12.84□□□□□ -0.35
VPS28-203ENST00000524521 XAGE1AQ9HD64 81 aa12.84□□□□□ -0.35
VPS28-203ENST00000524521 ATP5LO75964 103 aa12.83□□□□□ -0.36
VPS28-203ENST00000524521 IGLC3P0DOY3 106 aa12.83□□□□□ -0.36
VPS28-203ENST00000524521 UBE2BP63146 152 aa12.83□□□□□ -0.36
VPS28-203ENST00000524521 BAGE3Q86Y29 109 aa12.81□□□□□ -0.36
VPS28-203ENST00000524521 IGLV7-43P04211 117 aa12.8□□□□□ -0.36
VPS28-203ENST00000524521 ZNF22P17026 224 aaPredicted RBP12.79□□□□□ -0.36
VPS28-203ENST00000524521 CHCHD1Q96BP2 118 aaKnown RBP12.79□□□□□ -0.36
VPS28-203ENST00000524521 C22orf24Q9Y442 160 aa12.78□□□□□ -0.36
VPS28-203ENST00000524521 IGLV5-39A0A0G2JS06 123 aa12.76□□□□□ -0.37
VPS28-203ENST00000524521 PLA2G2DQ9UNK4 145 aa12.76□□□□□ -0.37
VPS28-203ENST00000524521 C11orf86A6NJI1 115 aa12.75□□□□□ -0.37
VPS28-203ENST00000524521 TMEM170BQ5T4T1 132 aa12.75□□□□□ -0.37
VPS28-203ENST00000524521 CHTOPQ9Y3Y2 248 aaKnown RBP12.75□□□□□ -0.37
VPS28-203ENST00000524521 TRGC2P03986 189 aa12.74□□□□□ -0.37
VPS28-203ENST00000524521 KRTAP10-8P60410 259 aa12.74□□□□□ -0.37
VPS28-203ENST00000524521 LBHQ53QV2 105 aaPredicted RBP12.74□□□□□ -0.37
VPS28-203ENST00000524521 DIRC1Q969H9 104 aa12.74□□□□□ -0.37
VPS28-203ENST00000524521 IFI27L1Q96BM0 104 aa12.73□□□□□ -0.37
VPS28-203ENST00000524521 HSBP1O75506 76 aa12.71□□□□□ -0.37
VPS28-203ENST00000524521 S100A1P23297 94 aa12.71□□□□□ -0.37
VPS28-203ENST00000524521 PFN2P35080 140 aa12.71□□□□□ -0.37
VPS28-203ENST00000524521 FAM19A2Q8N3H0 131 aa12.71□□□□□ -0.37
VPS28-203ENST00000524521 MRPL55Q7Z7F7 128 aaKnown RBP12.7□□□□□ -0.38
VPS28-203ENST00000524521 TP73-AS1Q9UF72 201 aa12.7□□□□□ -0.38
VPS28-203ENST00000524521 TRAV12-1A0A0B4J245 112 aa12.69□□□□□ -0.38
VPS28-203ENST00000524521 H0Y9J4 135 aa12.69□□□□□ -0.38
VPS28-203ENST00000524521 SCO1O75880 301 aa12.69□□□□□ -0.38
VPS28-203ENST00000524521 ODF1Q14990 250 aa12.69□□□□□ -0.38
VPS28-203ENST00000524521 ATP6V1G1O75348 118 aa12.68□□□□□ -0.38
VPS28-203ENST00000524521 ZNF625Q96I27 306 aaPredicted RBP12.68□□□□□ -0.38
VPS28-203ENST00000524521 COLCA2A8K830 154 aa12.67□□□□□ -0.38
VPS28-203ENST00000524521 LINC00167Q96N53 147 aa12.67□□□□□ -0.38
VPS28-203ENST00000524521 ERG28Q9UKR5 140 aa12.67□□□□□ -0.38
VPS28-203ENST00000524521 NUPR1O60356 82 aa12.66□□□□□ -0.38
VPS28-203ENST00000524521 GAGE10A6NGK3 116 aa12.65□□□□□ -0.38
VPS28-203ENST00000524521 RPL37AP8A6NKH3 93 aa12.65□□□□□ -0.38
VPS28-203ENST00000524521 NKAPP1Q8N9T2 125 aa12.65□□□□□ -0.38
VPS28-203ENST00000524521 TMEM223A0PJW6 202 aa12.64□□□□□ -0.39
VPS28-203ENST00000524521 SERF1AO75920 110 aa12.64□□□□□ -0.39
VPS28-203ENST00000524521 IGLV5-37A0A075B6J1 123 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 H0Y8G0 127 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 ZNF861PO60384 105 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 COX17Q14061 63 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 SFTA2Q6UW10 78 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 TNXBP22105 4242 aa12.63□□□□□ -0.39
VPS28-203ENST00000524521 PRR26Q8N8Z3 221 aa12.62□□□□□ -0.39
VPS28-203ENST00000524521 SND1-IT1Q9HBX3 110 aa12.62□□□□□ -0.39
VPS28-203ENST00000524521 LEPROTL1O95214 131 aa12.61□□□□□ -0.39
VPS28-203ENST00000524521 LINC00310P59036 64 aa12.61□□□□□ -0.39
VPS28-203ENST00000524521 BCE1O60756 84 aa12.59□□□□□ -0.39
VPS28-203ENST00000524521 HMCN2Q8NDA2 5059 aa12.59□□□□□ -0.39
VPS28-203ENST00000524521 LINC00158P58513 81 aa12.58□□□□□ -0.4
VPS28-203ENST00000524521 KRTAP1-4P0C5Y4 121 aa12.57□□□□□ -0.4
VPS28-203ENST00000524521 FABP4P15090 132 aa12.57□□□□□ -0.4
VPS28-203ENST00000524521 A0A0U1RRA0 63 aa12.56□□□□□ -0.4
VPS28-203ENST00000524521 VPREB1P12018 145 aa12.56□□□□□ -0.4
VPS28-203ENST00000524521 RPL28P46779 137 aaKnown RBP12.56□□□□□ -0.4
VPS28-203ENST00000524521 RPL24P83731 157 aaKnown RBP12.56□□□□□ -0.4
VPS28-203ENST00000524521 IGLV1-50A0A075B6I6 118 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms