RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 SVBPQ8N300 66 aa11.39□□□□□ -0.59
HOXD11-202ENST00000498438 TRAPPC1Q9Y5R8 145 aa11.39□□□□□ -0.59
HOXD11-202ENST00000498438 NDUFC2-KCTD14E9PQ53 114 aa11.37□□□□□ -0.59
HOXD11-202ENST00000498438 CKS1BP61024 79 aa11.37□□□□□ -0.59
HOXD11-202ENST00000498438 C6orf226Q5I0X4 101 aa11.37□□□□□ -0.59
HOXD11-202ENST00000498438 FAM19A5Q7Z5A7 132 aaPredicted RBP11.37□□□□□ -0.59
HOXD11-202ENST00000498438 LINC00469Q8N7U9 141 aa11.37□□□□□ -0.59
HOXD11-202ENST00000498438 TINCRA0A1B0GVN0 87 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 SERTAD4-AS1Q5TG53 156 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 SPINK6Q6UWN8 80 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 C18orf32Q8TCD1 76 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 CST9LQ9H4G1 147 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 PSORS1C2Q9UIG4 136 aa11.36□□□□□ -0.59
HOXD11-202ENST00000498438 TNXBP22105 4242 aa11.35□□□□□ -0.59
HOXD11-202ENST00000498438 SMIM1B2RUZ4 78 aa11.34□□□□□ -0.59
HOXD11-202ENST00000498438 SRSF9Q13242 221 aaKnown RBP eCLIP11.34□□□□□ -0.59
HOXD11-202ENST00000498438 PMVKQ15126 192 aa11.34□□□□□ -0.59
HOXD11-202ENST00000498438 URB1-AS1Q96HZ7 61 aa11.34□□□□□ -0.59
HOXD11-202ENST00000498438 IGLV5-45A0A087WSX0 123 aa11.33□□□□□ -0.6
HOXD11-202ENST00000498438 A0A096LNJ9 63 aa11.33□□□□□ -0.6
HOXD11-202ENST00000498438 C9orf129Q5T035 196 aaKnown RBP11.33□□□□□ -0.6
HOXD11-202ENST00000498438 HMCN2Q8NDA2 5059 aa11.33□□□□□ -0.6
HOXD11-202ENST00000498438 KRTAP7-1Q8IUC3 87 aa11.32□□□□□ -0.6
HOXD11-202ENST00000498438 F8VRH5 84 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 M0QXV9 152 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 LINC00614P0C842 121 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 PDZD11Q5EBL8 140 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 C1orf137Q5JT78 98 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 LINC01600Q96MT4 127 aa11.31□□□□□ -0.6
HOXD11-202ENST00000498438 SPINK8P0C7L1 97 aa11.3□□□□□ -0.6
HOXD11-202ENST00000498438 CXCL5P42830 114 aa11.3□□□□□ -0.6
HOXD11-202ENST00000498438 PMCHL1Q16048 86 aa11.3□□□□□ -0.6
HOXD11-202ENST00000498438 REG3GQ6UW15 175 aa11.3□□□□□ -0.6
HOXD11-202ENST00000498438 KRTAP11-1Q8IUC1 163 aa11.3□□□□□ -0.6
HOXD11-202ENST00000498438 HBDP02042 147 aa11.29□□□□□ -0.6
HOXD11-202ENST00000498438 COX7B2Q8TF08 81 aa11.29□□□□□ -0.6
HOXD11-202ENST00000498438 YPEL4Q96NS1 127 aa11.29□□□□□ -0.6
HOXD11-202ENST00000498438 IGLC3P0DOY3 106 aa11.27□□□□□ -0.61
HOXD11-202ENST00000498438 NDUFA6P56556 154 aa11.27□□□□□ -0.61
HOXD11-202ENST00000498438 XAGE1AQ9HD64 81 aa11.27□□□□□ -0.61
HOXD11-202ENST00000498438 H3BRM9 83 aa11.26□□□□□ -0.61
HOXD11-202ENST00000498438 RAB5BP61020 215 aa11.26□□□□□ -0.61
HOXD11-202ENST00000498438 UBE2BP63146 152 aa11.26□□□□□ -0.61
HOXD11-202ENST00000498438 PLA2G2DQ9UNK4 145 aa11.26□□□□□ -0.61
HOXD11-202ENST00000498438 IGLV7-43P04211 117 aa11.24□□□□□ -0.61
HOXD11-202ENST00000498438 CBLN2Q8IUK8 224 aa11.24□□□□□ -0.61
HOXD11-202ENST00000498438 ATP5LO75964 103 aa11.23□□□□□ -0.61
HOXD11-202ENST00000498438 ZNF22P17026 224 aaPredicted RBP11.23□□□□□ -0.61
HOXD11-202ENST00000498438 IGLV5-39A0A0G2JS06 123 aa11.21□□□□□ -0.61
HOXD11-202ENST00000498438 C22orf24Q9Y442 160 aa11.21□□□□□ -0.61
HOXD11-202ENST00000498438 KRTAP10-8P60410 259 aa11.2□□□□□ -0.62
HOXD11-202ENST00000498438 ODF1Q14990 250 aa11.2□□□□□ -0.62
HOXD11-202ENST00000498438 BAGE3Q86Y29 109 aa11.2□□□□□ -0.62
HOXD11-202ENST00000498438 DIRC1Q969H9 104 aa11.19□□□□□ -0.62
HOXD11-202ENST00000498438 CHCHD1Q96BP2 118 aaKnown RBP11.19□□□□□ -0.62
HOXD11-202ENST00000498438 C11orf86A6NJI1 115 aa11.18□□□□□ -0.62
HOXD11-202ENST00000498438 H0Y9J4 135 aa11.17□□□□□ -0.62
HOXD11-202ENST00000498438 LBHQ53QV2 105 aaPredicted RBP11.16□□□□□ -0.62
HOXD11-202ENST00000498438 TMEM170BQ5T4T1 132 aa11.16□□□□□ -0.62
HOXD11-202ENST00000498438 SLC7A5P1Q8MH63 180 aa11.16□□□□□ -0.62
HOXD11-202ENST00000498438 TP73-AS1Q9UF72 201 aa11.16□□□□□ -0.62
HOXD11-202ENST00000498438 MRPL55Q7Z7F7 128 aaKnown RBP11.15□□□□□ -0.62
HOXD11-202ENST00000498438 CHTOPQ9Y3Y2 248 aaKnown RBP11.15□□□□□ -0.62
HOXD11-202ENST00000498438 IFI27L1Q96BM0 104 aa11.14□□□□□ -0.63
HOXD11-202ENST00000498438 TRGC2P03986 189 aa11.13□□□□□ -0.63
HOXD11-202ENST00000498438 PFN2P35080 140 aa11.13□□□□□ -0.63
HOXD11-202ENST00000498438 TRAV12-1A0A0B4J245 112 aa11.12□□□□□ -0.63
HOXD11-202ENST00000498438 NUPR1O60356 82 aa11.12□□□□□ -0.63
HOXD11-202ENST00000498438 FAM19A2Q8N3H0 131 aa11.12□□□□□ -0.63
HOXD11-202ENST00000498438 HSBP1O75506 76 aa11.11□□□□□ -0.63
HOXD11-202ENST00000498438 ERG28Q9UKR5 140 aa11.11□□□□□ -0.63
HOXD11-202ENST00000498438 IGLV5-37A0A075B6J1 123 aa11.1□□□□□ -0.63
HOXD11-202ENST00000498438 ZNF625Q96I27 306 aaPredicted RBP11.1□□□□□ -0.63
HOXD11-202ENST00000498438 LINC00167Q96N53 147 aa11.1□□□□□ -0.63
HOXD11-202ENST00000498438 GAGE10A6NGK3 116 aa11.09□□□□□ -0.63
HOXD11-202ENST00000498438 RPL37AP8A6NKH3 93 aa11.09□□□□□ -0.63
HOXD11-202ENST00000498438 ZNF861PO60384 105 aa11.09□□□□□ -0.63
HOXD11-202ENST00000498438 PRR26Q8N8Z3 221 aa11.09□□□□□ -0.63
HOXD11-202ENST00000498438 NKAPP1Q8N9T2 125 aa11.09□□□□□ -0.63
HOXD11-202ENST00000498438 TMEM223A0PJW6 202 aa11.08□□□□□ -0.64
HOXD11-202ENST00000498438 KRTAP1-4P0C5Y4 121 aa11.08□□□□□ -0.64
HOXD11-202ENST00000498438 LINC00310P59036 64 aa11.08□□□□□ -0.64
HOXD11-202ENST00000498438 SFTA2Q6UW10 78 aa11.08□□□□□ -0.64
HOXD11-202ENST00000498438 UBR4Q5T4S7 5183 aa11.07□□□□□ -0.64
HOXD11-202ENST00000498438 COX17Q14061 63 aa11.07□□□□□ -0.64
HOXD11-202ENST00000498438 SND1-IT1Q9HBX3 110 aa11.07□□□□□ -0.64
HOXD11-202ENST00000498438 BCE1O60756 84 aa11.06□□□□□ -0.64
HOXD11-202ENST00000498438 SERF1AO75920 110 aa11.06□□□□□ -0.64
HOXD11-202ENST00000498438 H0Y8G0 127 aa11.05□□□□□ -0.64
HOXD11-202ENST00000498438 SCO1O75880 301 aa11.05□□□□□ -0.64
HOXD11-202ENST00000498438 IGLV1-50A0A075B6I6 118 aa11.04□□□□□ -0.64
HOXD11-202ENST00000498438 COLCA2A8K830 154 aa11.04□□□□□ -0.64
HOXD11-202ENST00000498438 LEPROTL1O95214 131 aa11.03□□□□□ -0.64
HOXD11-202ENST00000498438 VPREB1P12018 145 aa11.03□□□□□ -0.64
HOXD11-202ENST00000498438 RPL28P46779 137 aaKnown RBP11.03□□□□□ -0.64
HOXD11-202ENST00000498438 IGKV2-28A0A075B6P5 120 aa11.02□□□□□ -0.65
HOXD11-202ENST00000498438 IGKV2D-28P01615 120 aa11.02□□□□□ -0.65
HOXD11-202ENST00000498438 LINC00158P58513 81 aa11.01□□□□□ -0.65
HOXD11-202ENST00000498438 Q8NDZ9 215 aa11.01□□□□□ -0.65
HOXD11-202ENST00000498438 RPL24P83731 157 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms