RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FABP9Q0Z7S8 132 aa8.23□□□□□ -1.09
SQSTM1-208ENST00000485412 COX19Q49B96 90 aa8.23□□□□□ -1.09
SQSTM1-208ENST00000485412 A0A1B0GW15 77 aa8.22□□□□□ -1.09
SQSTM1-208ENST00000485412 NDUFC2-KCTD14E9PQ53 114 aa8.22□□□□□ -1.09
SQSTM1-208ENST00000485412 LINC00173Q6ZV60 143 aa8.22□□□□□ -1.09
SQSTM1-208ENST00000485412 LINC00469Q8N7U9 141 aa8.22□□□□□ -1.09
SQSTM1-208ENST00000485412 MUC17Q685J3 4493 aa8.22□□□□□ -1.09
SQSTM1-208ENST00000485412 TRBV30A0A0K0K1B3 111 aa8.21□□□□□ -1.1
SQSTM1-208ENST00000485412 TSPAN13O95857 204 aa8.21□□□□□ -1.1
SQSTM1-208ENST00000485412 IFI27P40305 119 aaPredicted RBP8.21□□□□□ -1.1
SQSTM1-208ENST00000485412 LCE2AQ5TA79 106 aaPredicted RBP8.21□□□□□ -1.1
SQSTM1-208ENST00000485412 PYGO1Q9Y3Y4 419 aa8.21□□□□□ -1.1
SQSTM1-208ENST00000485412 LOC389332A0A1B0GUA5 103 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 PCP4L1A6NKN8 68 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 ATP5L2Q7Z4Y8 100 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 TMEM141Q96I45 108 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 PRELID3AQ96N28 172 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 GNB1LQ9BYB4 327 aa8.2□□□□□ -1.1
SQSTM1-208ENST00000485412 S100A12P80511 92 aa8.19□□□□□ -1.1
SQSTM1-208ENST00000485412 TMEM136Q6ZRR5 245 aa8.19□□□□□ -1.1
SQSTM1-208ENST00000485412 ORMDL3Q8N138 153 aa8.19□□□□□ -1.1
SQSTM1-208ENST00000485412 XAGE1AQ9HD64 81 aa8.19□□□□□ -1.1
SQSTM1-208ENST00000485412 A0A087X002 238 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 ZNF861PO60384 105 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BKO60814 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 PPBPP02775 128 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 TRGC2P03986 189 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BJP06899 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BOP23527 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BBP33778 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BDP58876 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BCP62807 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST2H2BEQ16778 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BHQ93079 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 PACRGQ96M98 296 aaPredicted RBP8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BNQ99877 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST1H2BMQ99879 126 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 TOMM7Q9P0U1 55 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 C22orf24Q9Y442 160 aa8.18□□□□□ -1.1
SQSTM1-208ENST00000485412 NDUFA6P56556 154 aa8.17□□□□□ -1.1
SQSTM1-208ENST00000485412 TEX43Q6ZNM6 134 aa8.17□□□□□ -1.1
SQSTM1-208ENST00000485412 TRAPPC1Q9Y5R8 145 aa8.17□□□□□ -1.1
SQSTM1-208ENST00000485412 CTAG1AP78358 180 aa8.16□□□□□ -1.1
SQSTM1-208ENST00000485412 C2orf66Q6UXQ4 117 aa8.16□□□□□ -1.1
SQSTM1-208ENST00000485412 AMELXQ99217 191 aa8.16□□□□□ -1.1
SQSTM1-208ENST00000485412 LINC01561Q8N1V8 128 aa8.15□□□□□ -1.1
SQSTM1-208ENST00000485412 HIST3H2BBQ8N257 126 aa8.15□□□□□ -1.1
SQSTM1-208ENST00000485412 PRSS47A8MTI9 375 aa8.14□□□□□ -1.11
SQSTM1-208ENST00000485412 ANAPC11Q9NYG5 84 aa8.14□□□□□ -1.11
SQSTM1-208ENST00000485412 CYSLTR1Q9Y271 337 aa8.14□□□□□ -1.11
SQSTM1-208ENST00000485412 IGIPA6NJ69 53 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 PRSS2P07478 247 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 CKS1BP61024 79 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 Q6ZN92 141 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 Q8N8P6 123 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 C2orf88Q9BSF0 95 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 MRPL18Q9H0U6 180 aaKnown RBP8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 MAP1LC3AQ9H492 121 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 CDKN2A-AS1Q9UH64 79 aa8.13□□□□□ -1.11
SQSTM1-208ENST00000485412 C6orf226Q5I0X4 101 aa8.12□□□□□ -1.11
SQSTM1-208ENST00000485412 COA6Q5JTJ3 125 aaKnown RBP8.12□□□□□ -1.11
SQSTM1-208ENST00000485412 Q8IZM0 81 aa8.12□□□□□ -1.11
SQSTM1-208ENST00000485412 ALKBH7Q9BT30 221 aaPredicted RBP8.12□□□□□ -1.11
SQSTM1-208ENST00000485412 VCX2Q9H322 139 aa8.12□□□□□ -1.11
SQSTM1-208ENST00000485412 RPL37AP8A6NKH3 93 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 LINC00587B1AMM8 73 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 NUPR1O60356 82 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 PYY3Q5JQD4 70 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 FAM19A3Q7Z5A8 133 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 MRPL55Q7Z7F7 128 aaKnown RBP8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 TYMSOSQ8TAI1 123 aa8.11□□□□□ -1.11
SQSTM1-208ENST00000485412 S100A2P29034 98 aa8.1□□□□□ -1.11
SQSTM1-208ENST00000485412 KRTAP13-2Q52LG2 175 aa8.1□□□□□ -1.11
SQSTM1-208ENST00000485412 GAGE10A6NGK3 116 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 F8VRH5 84 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 BCE1O60756 84 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 CRYGAP11844 174 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 LINC00167Q96N53 147 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 RETNLBQ9BQ08 111 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 LAMTOR2Q9Y2Q5 125 aa8.09□□□□□ -1.11
SQSTM1-208ENST00000485412 LBHQ53QV2 105 aaPredicted RBP8.08□□□□□ -1.12
SQSTM1-208ENST00000485412 PDZD11Q5EBL8 140 aa8.08□□□□□ -1.12
SQSTM1-208ENST00000485412 HIST1H2BLQ99880 126 aa8.08□□□□□ -1.12
SQSTM1-208ENST00000485412 TP73-AS1Q9UF72 201 aa8.08□□□□□ -1.12
SQSTM1-208ENST00000485412 SMIM1B2RUZ4 78 aa8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 RPL28P46779 137 aaKnown RBP8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 HERVK_113P63121 156 aa8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 ORMDL2Q53FV1 153 aa8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 KRTAP13-1Q8IUC0 172 aa8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 CDIP1Q9H305 208 aa8.07□□□□□ -1.12
SQSTM1-208ENST00000485412 FABP4P15090 132 aa8.06□□□□□ -1.12
SQSTM1-208ENST00000485412 KIAA1644Q3SXP7 199 aa8.05□□□□□ -1.12
SQSTM1-208ENST00000485412 GEMIN7Q9H840 131 aaKnown RBP8.05□□□□□ -1.12
SQSTM1-208ENST00000485412 NPSP0C0P6 89 aa8.04□□□□□ -1.12
SQSTM1-208ENST00000485412 TOMM6Q96B49 74 aa8.04□□□□□ -1.12
SQSTM1-208ENST00000485412 TIMM17AQ99595 171 aa8.04□□□□□ -1.12
SQSTM1-208ENST00000485412 C18orf32Q8TCD1 76 aa8.03□□□□□ -1.12
SQSTM1-208ENST00000485412 COX7B2Q8TF08 81 aa8.03□□□□□ -1.12
SQSTM1-208ENST00000485412 NXT2Q9NPJ8 142 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms