RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 LINC00612Q8N6U2 182 aa13.38□□□□□ -0.27
CCM2-214ENST00000481194 TSPEAR-AS2P59090 65 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 UNQ6190/PRO20217Q6UXQ8 127 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 LINC00526Q96FQ7 95 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 IGLV5-45A0A087WSX0 123 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 IGLV5-39A0A0G2JS06 123 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 K7EIL1 84 aa13.37□□□□□ -0.27
CCM2-214ENST00000481194 HECTD1Q9ULT8 2610 aa13.36□□□□□ -0.27
CCM2-214ENST00000481194 A0A1B0GX51 115 aa13.35□□□□□ -0.27
CCM2-214ENST00000481194 DHRS4-AS1Q9P1J3 65 aa13.35□□□□□ -0.27
CCM2-214ENST00000481194 TRIAP1O43715 76 aa13.34□□□□□ -0.27
CCM2-214ENST00000481194 FAM19A1Q7Z5A9 133 aa13.34□□□□□ -0.27
CCM2-214ENST00000481194 WIPF1O43516 503 aa13.34□□□□□ -0.27
CCM2-214ENST00000481194 C1orf134Q5TEV5 83 aa13.34□□□□□ -0.27
CCM2-214ENST00000481194 TRIOO75962 3097 aa13.34□□□□□ -0.27
CCM2-214ENST00000481194 RBM3P98179 157 aaKnown RBP13.33□□□□□ -0.27
CCM2-214ENST00000481194 WFDC2Q14508 124 aa13.33□□□□□ -0.27
CCM2-214ENST00000481194 FOXI1Q12951 378 aa13.33□□□□□ -0.28
CCM2-214ENST00000481194 NDUFC2O95298 119 aa13.33□□□□□ -0.28
CCM2-214ENST00000481194 IGHV3OR16-9A0A0B4J2B5 98 aa13.32□□□□□ -0.28
CCM2-214ENST00000481194 NDUFC2-KCTD14E9PQ53 114 aa13.32□□□□□ -0.28
CCM2-214ENST00000481194 ATOX1O00244 68 aa13.31□□□□□ -0.28
CCM2-214ENST00000481194 C6orf99Q4VX62 202 aa13.31□□□□□ -0.28
CCM2-214ENST00000481194 MDFIQ99750 246 aa13.31□□□□□ -0.28
CCM2-214ENST00000481194 PLAC8L1A1L4L8 177 aa13.31□□□□□ -0.28
CCM2-214ENST00000481194 NREPQ16612 68 aa13.31□□□□□ -0.28
CCM2-214ENST00000481194 NDUFB1O75438 58 aa13.3□□□□□ -0.28
CCM2-214ENST00000481194 ZNF706Q9Y5V0 76 aaPredicted RBP13.29□□□□□ -0.28
CCM2-214ENST00000481194 NDUFS5O43920 106 aa13.29□□□□□ -0.28
CCM2-214ENST00000481194 TMEM258P61165 79 aa13.29□□□□□ -0.28
CCM2-214ENST00000481194 TM2D3Q9BRN9 247 aa13.29□□□□□ -0.28
CCM2-214ENST00000481194 HELZ2Q9BYK8 2649 aaKnown RBP13.28□□□□□ -0.28
CCM2-214ENST00000481194 C2CD3Q4AC94 2353 aa13.28□□□□□ -0.28
CCM2-214ENST00000481194 HIGD2AQ9BW72 106 aa13.27□□□□□ -0.28
CCM2-214ENST00000481194 MGAQ8IWI9 3026 aa13.27□□□□□ -0.29
CCM2-214ENST00000481194 ZNF73O43830 326 aaPredicted RBP13.27□□□□□ -0.29
CCM2-214ENST00000481194 SMIM11BQ8TCY0 68 aa13.27□□□□□ -0.29
CCM2-214ENST00000481194 SMIM20Q8N5G0 67 aa13.26□□□□□ -0.29
CCM2-214ENST00000481194 Q9UF83 564 aa13.25□□□□□ -0.29
CCM2-214ENST00000481194 IGLV5-52A0A0A0MRZ9 124 aa13.25□□□□□ -0.29
CCM2-214ENST00000481194 LST1O00453 97 aa13.24□□□□□ -0.29
CCM2-214ENST00000481194 FAM19A3Q7Z5A8 133 aa13.24□□□□□ -0.29
CCM2-214ENST00000481194 SETD2Q9BYW2 2564 aaPredicted RBP13.24□□□□□ -0.29
CCM2-214ENST00000481194 IGKV3D-7A0A0C4DH55 119 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 XIRP2A4UGR9 3374 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 DNAH10OSP0CZ25 163 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 RPL28P46779 137 aaKnown RBP13.23□□□□□ -0.29
CCM2-214ENST00000481194 IGSF10Q6WRI0 2623 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 MP68P56378 58 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 ADAMTSL4-AS1Q5T5F5 129 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 WWC2-AS2Q96NR7 200 aa13.23□□□□□ -0.29
CCM2-214ENST00000481194 C9orf116Q5BN46 136 aaPredicted RBP13.22□□□□□ -0.29
CCM2-214ENST00000481194 IGKV2-28A0A075B6P5 120 aa13.22□□□□□ -0.29
CCM2-214ENST00000481194 IGKV2D-28P01615 120 aa13.22□□□□□ -0.29
CCM2-214ENST00000481194 C4orf48Q5BLP8 95 aa13.22□□□□□ -0.29
CCM2-214ENST00000481194 LINC00588Q9Y4M8 146 aa13.22□□□□□ -0.29
CCM2-214ENST00000481194 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.22□□□□□ -0.29
CCM2-214ENST00000481194 FLNAP21333 2647 aaKnown RBP13.22□□□□□ -0.29
CCM2-214ENST00000481194 M0QXV9 152 aa13.21□□□□□ -0.29
CCM2-214ENST00000481194 C6orf223Q8N319 242 aa13.21□□□□□ -0.29
CCM2-214ENST00000481194 FAM236AA0A1B0GUQ0 79 aa13.21□□□□□ -0.29
CCM2-214ENST00000481194 FAM236BA0A1B0GV22 79 aa13.21□□□□□ -0.29
CCM2-214ENST00000481194 B5MCH6 92 aa13.21□□□□□ -0.3
CCM2-214ENST00000481194 Q6ZRU5 148 aa13.2□□□□□ -0.3
CCM2-214ENST00000481194 SPTBN5Q9NRC6 3674 aaKnown RBP13.19□□□□□ -0.3
CCM2-214ENST00000481194 LINC00643Q86TS7 51 aa13.18□□□□□ -0.3
CCM2-214ENST00000481194 PRYO14603 147 aa13.17□□□□□ -0.3
CCM2-214ENST00000481194 NBDYA0A0U1RRE5 68 aa13.17□□□□□ -0.3
CCM2-214ENST00000481194 ITPR3Q14573 2671 aa13.15□□□□□ -0.3
CCM2-214ENST00000481194 TRBV10-3A0A0K0K1G6 114 aa13.15□□□□□ -0.3
CCM2-214ENST00000481194 REG3GQ6UW15 175 aa13.15□□□□□ -0.3
CCM2-214ENST00000481194 ENHOQ6UWT2 76 aa13.15□□□□□ -0.3
CCM2-214ENST00000481194 RPL37AP8A6NKH3 93 aa13.14□□□□□ -0.31
CCM2-214ENST00000481194 C14orf132Q9NPU4 83 aa13.14□□□□□ -0.31
CCM2-214ENST00000481194 MUC4Q99102 2169 aa13.13□□□□□ -0.31
CCM2-214ENST00000481194 Q6ZQY7 126 aa13.12□□□□□ -0.31
CCM2-214ENST00000481194 GVQW2A0A096LPI5 108 aaPredicted RBP13.12□□□□□ -0.31
CCM2-214ENST00000481194 MRPL55Q7Z7F7 128 aaKnown RBP13.12□□□□□ -0.31
CCM2-214ENST00000481194 SLPIP03973 132 aa13.11□□□□□ -0.31
CCM2-214ENST00000481194 FLNBO75369 2602 aaKnown RBP13.11□□□□□ -0.31
CCM2-214ENST00000481194 REV3LO60673 3130 aa13.09□□□□□ -0.31
CCM2-214ENST00000481194 SS18L2Q9UHA2 77 aa13.09□□□□□ -0.31
CCM2-214ENST00000481194 CFAP46Q8IYW2 2715 aa13.09□□□□□ -0.31
CCM2-214ENST00000481194 C3orf84H3BNL1 204 aa13.09□□□□□ -0.31
CCM2-214ENST00000481194 C6orf48Q9UBA6 75 aa13.08□□□□□ -0.32
CCM2-214ENST00000481194 PRR34Q9NV39 138 aa13.07□□□□□ -0.32
CCM2-214ENST00000481194 ATP5EP2Q5VTU8 51 aa13.07□□□□□ -0.32
CCM2-214ENST00000481194 Q8N814 137 aa13.07□□□□□ -0.32
CCM2-214ENST00000481194 PPDPFQ9H3Y8 114 aa13.07□□□□□ -0.32
CCM2-214ENST00000481194 CHKB-CPT1BH3BT56 60 aa13.06□□□□□ -0.32
CCM2-214ENST00000481194 UPK3BQ9BT76 320 aa13.06□□□□□ -0.32
CCM2-214ENST00000481194 BPY2O14599 106 aa13.05□□□□□ -0.32
CCM2-214ENST00000481194 TEX49A0A1B0GTD5 131 aa13.05□□□□□ -0.32
CCM2-214ENST00000481194 J3KT08 172 aa13.04□□□□□ -0.32
CCM2-214ENST00000481194 Q8N3U1 123 aa13.04□□□□□ -0.32
CCM2-214ENST00000481194 WDFY4Q6ZS81 3184 aa13.04□□□□□ -0.32
CCM2-214ENST00000481194 DSPP15924 2871 aaKnown RBP13.04□□□□□ -0.32
CCM2-214ENST00000481194 ZNF575Q86XF7 245 aa13.03□□□□□ -0.32
CCM2-214ENST00000481194 PRR3P79522 188 aaKnown RBP13.02□□□□□ -0.33
CCM2-214ENST00000481194 COL6A3P12111 3177 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms