RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 A6NED7 52 aa13.59□□□□□ -0.23
CCDC88B-204ENST00000463837 IGLV4-60A0A075B6I1 120 aa13.58□□□□□ -0.24
CCDC88B-204ENST00000463837 LOC107984640A0A0U1RRK4 108 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 JMJD1CQ15652 2540 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 SMCPP49901 116 aaPredicted RBP13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 SOSTDC1Q6X4U4 206 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 ADAMTS20P59510 1910 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 IGLV5-39A0A0G2JS06 123 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 TRBV10-3A0A0K0K1G6 114 aa13.57□□□□□ -0.24
CCDC88B-204ENST00000463837 A0A1B0GUV1 79 aa13.56□□□□□ -0.24
CCDC88B-204ENST00000463837 FHL2Q14192 279 aa13.56□□□□□ -0.24
CCDC88B-204ENST00000463837 PRR15LQ9BU68 103 aa13.56□□□□□ -0.24
CCDC88B-204ENST00000463837 Q6ZSN1 163 aa13.56□□□□□ -0.24
CCDC88B-204ENST00000463837 FAM19A4Q96LR4 140 aa13.55□□□□□ -0.24
CCDC88B-204ENST00000463837 LINC00315P59091 139 aa13.54□□□□□ -0.24
CCDC88B-204ENST00000463837 SBSPONQ8IVN8 264 aa13.54□□□□□ -0.24
CCDC88B-204ENST00000463837 ZNF706Q9Y5V0 76 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-204ENST00000463837 RAI1Q7Z5J4 1906 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-204ENST00000463837 IGLV1-51P01701 117 aa13.54□□□□□ -0.24
CCDC88B-204ENST00000463837 F8WDY8 70 aa13.53□□□□□ -0.24
CCDC88B-204ENST00000463837 IGHV4-30-4P0DP06 118 aa13.53□□□□□ -0.24
CCDC88B-204ENST00000463837 OXLD1Q5BKU9 147 aa13.53□□□□□ -0.24
CCDC88B-204ENST00000463837 LINC00846Q9NV44 126 aa13.53□□□□□ -0.24
CCDC88B-204ENST00000463837 PRYO14603 147 aa13.52□□□□□ -0.24
CCDC88B-204ENST00000463837 LY6G6CO95867 125 aa13.52□□□□□ -0.25
CCDC88B-204ENST00000463837 Q8N3U1 123 aa13.52□□□□□ -0.25
CCDC88B-204ENST00000463837 TET2Q6N021 2002 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-204ENST00000463837 ZFYVE26Q68DK2 2539 aa13.5□□□□□ -0.25
CCDC88B-204ENST00000463837 LINC00474Q9P2X8 69 aa13.5□□□□□ -0.25
CCDC88B-204ENST00000463837 KRTAP10-9P60411 292 aa13.5□□□□□ -0.25
CCDC88B-204ENST00000463837 LINC00575Q6W349 94 aa13.5□□□□□ -0.25
CCDC88B-204ENST00000463837 AGRNO00468 2067 aa13.5□□□□□ -0.25
CCDC88B-204ENST00000463837 M0R2N4 97 aa13.49□□□□□ -0.25
CCDC88B-204ENST00000463837 LINC00337Q8N6G1 96 aa13.49□□□□□ -0.25
CCDC88B-204ENST00000463837 SPINK6Q6UWN8 80 aa13.48□□□□□ -0.25
CCDC88B-204ENST00000463837 C1orf137Q5JT78 98 aa13.48□□□□□ -0.25
CCDC88B-204ENST00000463837 Q8N9L7 120 aa13.48□□□□□ -0.25
CCDC88B-204ENST00000463837 NUPR2A6NF83 97 aa13.47□□□□□ -0.25
CCDC88B-204ENST00000463837 CRYGAP11844 174 aa13.47□□□□□ -0.25
CCDC88B-204ENST00000463837 CXCL6P80162 114 aa13.47□□□□□ -0.25
CCDC88B-204ENST00000463837 IGLV5-45A0A087WSX0 123 aa13.47□□□□□ -0.25
CCDC88B-204ENST00000463837 Q6ZVQ6 151 aa13.47□□□□□ -0.25
CCDC88B-204ENST00000463837 BCE1O60756 84 aa13.46□□□□□ -0.25
CCDC88B-204ENST00000463837 NANOS2P60321 138 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-204ENST00000463837 SMR3AQ99954 134 aa13.46□□□□□ -0.25
CCDC88B-204ENST00000463837 CHD8Q9HCK8 2581 aa13.45□□□□□ -0.26
CCDC88B-204ENST00000463837 A0A1W2PPR1 153 aa13.45□□□□□ -0.26
CCDC88B-204ENST00000463837 C11orf72Q8NBR9 251 aa13.44□□□□□ -0.26
CCDC88B-204ENST00000463837 LINC00208Q96KT6 92 aa13.44□□□□□ -0.26
CCDC88B-204ENST00000463837 C16orf95Q9H693 158 aa13.43□□□□□ -0.26
CCDC88B-204ENST00000463837 LINC01547P58512 204 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-204ENST00000463837 ABCA12Q86UK0 2595 aa13.43□□□□□ -0.26
CCDC88B-204ENST00000463837 C2orf48Q96LS8 159 aa13.43□□□□□ -0.26
CCDC88B-204ENST00000463837 TMEM254Q8TBM7 123 aa13.41□□□□□ -0.26
CCDC88B-204ENST00000463837 RPS28P62857 69 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-204ENST00000463837 A8MTW9 85 aa13.4□□□□□ -0.26
CCDC88B-204ENST00000463837 C6orf223Q8N319 242 aa13.4□□□□□ -0.26
CCDC88B-204ENST00000463837 IGLV9-49A0A0B4J1Y8 123 aa13.39□□□□□ -0.27
CCDC88B-204ENST00000463837 C10orf25Q5T742 122 aa13.39□□□□□ -0.27
CCDC88B-204ENST00000463837 PMAIP1Q13794 54 aa13.38□□□□□ -0.27
CCDC88B-204ENST00000463837 USP9XQ93008 2570 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-204ENST00000463837 REG3GQ6UW15 175 aa13.37□□□□□ -0.27
CCDC88B-204ENST00000463837 IGHV3OR16-9A0A0B4J2B5 98 aa13.37□□□□□ -0.27
CCDC88B-204ENST00000463837 PLAC8L1A1L4L8 177 aa13.36□□□□□ -0.27
CCDC88B-204ENST00000463837 KLK9Q2XQG4 91 aa13.36□□□□□ -0.27
CCDC88B-204ENST00000463837 CENPFP49454 3210 aa13.36□□□□□ -0.27
CCDC88B-204ENST00000463837 Q8N2B8 174 aa13.36□□□□□ -0.27
CCDC88B-204ENST00000463837 PSPHP1O15172 72 aa13.36□□□□□ -0.27
CCDC88B-204ENST00000463837 K7ERS5 55 aa13.35□□□□□ -0.27
CCDC88B-204ENST00000463837 TLN2Q9Y4G6 2542 aa13.35□□□□□ -0.27
CCDC88B-204ENST00000463837 SETD2Q9BYW2 2564 aaPredicted RBP13.34□□□□□ -0.27
CCDC88B-204ENST00000463837 TRBV7-6A0A0J9YX20 115 aa13.33□□□□□ -0.28
CCDC88B-204ENST00000463837 LRRK2Q5S007 2527 aa13.32□□□□□ -0.28
CCDC88B-204ENST00000463837 GOLGB1Q14789 3259 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-204ENST00000463837 COL4A2P08572 1712 aa13.31□□□□□ -0.28
CCDC88B-204ENST00000463837 FN1P02751 2386 aaKnown RBP13.31□□□□□ -0.28
CCDC88B-204ENST00000463837 ESRGQ1W209 222 aa13.29□□□□□ -0.28
CCDC88B-204ENST00000463837 RETNQ9HD89 108 aa13.28□□□□□ -0.28
CCDC88B-204ENST00000463837 ZNF462Q96JM2 2506 aa13.28□□□□□ -0.28
CCDC88B-204ENST00000463837 FAM218AQ96MZ4 157 aa13.28□□□□□ -0.28
CCDC88B-204ENST00000463837 PRO0628Q9UI54 55 aa13.28□□□□□ -0.28
CCDC88B-204ENST00000463837 A0A1B0GW54 56 aa13.27□□□□□ -0.28
CCDC88B-204ENST00000463837 CEP295Q9C0D2 2601 aa13.27□□□□□ -0.29
CCDC88B-204ENST00000463837 hDV103S1A0JD37 113 aa13.27□□□□□ -0.29
CCDC88B-204ENST00000463837 DEFB116Q30KQ4 102 aa13.26□□□□□ -0.29
CCDC88B-204ENST00000463837 LYPD5Q6UWN5 251 aa13.26□□□□□ -0.29
CCDC88B-204ENST00000463837 Q6ZTC4 211 aa13.26□□□□□ -0.29
CCDC88B-204ENST00000463837 HCG22E2RYF7 251 aa13.26□□□□□ -0.29
CCDC88B-204ENST00000463837 A0A087WSZ3 146 aa13.25□□□□□ -0.29
CCDC88B-204ENST00000463837 SPATA3Q8NHX4 192 aa13.25□□□□□ -0.29
CCDC88B-204ENST00000463837 PCOTHQ58A44 107 aa13.24□□□□□ -0.29
CCDC88B-204ENST00000463837 ANKRD11Q6UB99 2663 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-204ENST00000463837 LITAFQ99732 161 aa13.24□□□□□ -0.29
CCDC88B-204ENST00000463837 LOC110117498A0A087WWA1 95 aa13.23□□□□□ -0.29
CCDC88B-204ENST00000463837 NHLRC4P0CG21 123 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-204ENST00000463837 USP9YO00507 2555 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-204ENST00000463837 H0Y9P7 68 aa13.22□□□□□ -0.29
CCDC88B-204ENST00000463837 Q9BRP9 147 aa13.22□□□□□ -0.29
CCDC88B-204ENST00000463837 Q6ZRU5 148 aa13.22□□□□□ -0.29
CCDC88B-204ENST00000463837 IGLV5-52A0A0A0MRZ9 124 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms