RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 FAM19A3Q7Z5A8 133 aa10.05□□□□□ -0.8
COL7A1-203ENST00000459756 A0A1W2PNN7 141 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 SERF1AO75920 110 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 TLX1NBP0CAT3 122 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 SEC11AP67812 179 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 C9orf116Q5BN46 136 aaPredicted RBP10.04□□□□□ -0.8
COL7A1-203ENST00000459756 FAM19A2Q8N3H0 131 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 C6orf48Q9UBA6 75 aa10.04□□□□□ -0.8
COL7A1-203ENST00000459756 HERVK_113P63121 156 aa10.03□□□□□ -0.8
COL7A1-203ENST00000459756 Q6ZRP5 223 aa10.03□□□□□ -0.8
COL7A1-203ENST00000459756 TRBV30A0A0K0K1B3 111 aa10.02□□□□□ -0.81
COL7A1-203ENST00000459756 PDZD11Q5EBL8 140 aa10.02□□□□□ -0.81
COL7A1-203ENST00000459756 LINC00310P59036 64 aa10.01□□□□□ -0.81
COL7A1-203ENST00000459756 PMVKQ15126 192 aa10.01□□□□□ -0.81
COL7A1-203ENST00000459756 SERTAD4-AS1Q5TG53 156 aa10.01□□□□□ -0.81
COL7A1-203ENST00000459756 GEMIN7Q9H840 131 aaKnown RBP10.01□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BKO60814 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 ATP5LO75964 103 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BJP06899 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 PRSS2P07478 247 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BOP23527 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BBP33778 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BDP58876 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BCP62807 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST2H2BEQ16778 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST2H2BFQ5QNW6 126 aaPredicted RBP10□□□□□ -0.81
COL7A1-203ENST00000459756 C2orf82Q6UX34 121 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BHQ93079 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 PACRGQ96M98 296 aaPredicted RBP10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BNQ99877 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 HIST1H2BMQ99879 126 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 CST9LQ9H4G1 147 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 CDKN2A-AS1Q9UH64 79 aa10□□□□□ -0.81
COL7A1-203ENST00000459756 NUPR1O60356 82 aa9.99□□□□□ -0.81
COL7A1-203ENST00000459756 SPINK6Q6UWN8 80 aa9.99□□□□□ -0.81
COL7A1-203ENST00000459756 Q8IZM0 81 aa9.99□□□□□ -0.81
COL7A1-203ENST00000459756 NDUFC2-KCTD14E9PQ53 114 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 MT1HL1P0DM35 61 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 CKS1BP61024 79 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 GAGE2EQ4V326 116 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 C6orf226Q5I0X4 101 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 LINC00469Q8N7U9 141 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 TOMM7Q9P0U1 55 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 GAGE2DQ9UEU5 116 aa9.98□□□□□ -0.81
COL7A1-203ENST00000459756 H0Y8G0 127 aa9.97□□□□□ -0.81
COL7A1-203ENST00000459756 PHF5AQ7RTV0 110 aaKnown RBP9.97□□□□□ -0.81
COL7A1-203ENST00000459756 TINCRA0A1B0GVN0 87 aa9.96□□□□□ -0.82
COL7A1-203ENST00000459756 FABP4P15090 132 aa9.96□□□□□ -0.82
COL7A1-203ENST00000459756 SRSF9Q13242 221 aaKnown RBP eCLIP9.96□□□□□ -0.82
COL7A1-203ENST00000459756 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.82
COL7A1-203ENST00000459756 FAM168BA1KXE4 195 aa9.95□□□□□ -0.82
COL7A1-203ENST00000459756 LEPROTL1O95214 131 aa9.95□□□□□ -0.82
COL7A1-203ENST00000459756 PSORS1C2Q9UIG4 136 aa9.95□□□□□ -0.82
COL7A1-203ENST00000459756 REG3GQ6UW15 175 aa9.94□□□□□ -0.82
COL7A1-203ENST00000459756 FAM19A5Q7Z5A7 132 aaPredicted RBP9.94□□□□□ -0.82
COL7A1-203ENST00000459756 LINC01600Q96MT4 127 aa9.94□□□□□ -0.82
COL7A1-203ENST00000459756 IGLV5-45A0A087WSX0 123 aa9.93□□□□□ -0.82
COL7A1-203ENST00000459756 F8VRH5 84 aa9.93□□□□□ -0.82
COL7A1-203ENST00000459756 CHTOPQ9Y3Y2 248 aaKnown RBP9.93□□□□□ -0.82
COL7A1-203ENST00000459756 SMIM1B2RUZ4 78 aa9.92□□□□□ -0.82
COL7A1-203ENST00000459756 SPINK8P0C7L1 97 aa9.92□□□□□ -0.82
COL7A1-203ENST00000459756 CXCL5P42830 114 aa9.92□□□□□ -0.82
COL7A1-203ENST00000459756 HMCN2Q8NDA2 5059 aa9.92□□□□□ -0.82
COL7A1-203ENST00000459756 IGLC3P0DOY3 106 aa9.91□□□□□ -0.82
COL7A1-203ENST00000459756 C1orf137Q5JT78 98 aa9.91□□□□□ -0.82
COL7A1-203ENST00000459756 C9orf129Q5T035 196 aaKnown RBP9.91□□□□□ -0.82
COL7A1-203ENST00000459756 HSPB8Q9UJY1 196 aa9.91□□□□□ -0.82
COL7A1-203ENST00000459756 TNXBP22105 4242 aa9.91□□□□□ -0.82
COL7A1-203ENST00000459756 M0QXV9 152 aa9.9□□□□□ -0.82
COL7A1-203ENST00000459756 KRTAP7-1Q8IUC3 87 aa9.9□□□□□ -0.82
COL7A1-203ENST00000459756 C11orf86A6NJI1 115 aa9.89□□□□□ -0.83
COL7A1-203ENST00000459756 H3BRM9 83 aa9.89□□□□□ -0.83
COL7A1-203ENST00000459756 ZNF22P17026 224 aaPredicted RBP9.89□□□□□ -0.83
COL7A1-203ENST00000459756 TMEM170BQ5T4T1 132 aa9.89□□□□□ -0.83
COL7A1-203ENST00000459756 COX7B2Q8TF08 81 aa9.89□□□□□ -0.83
COL7A1-203ENST00000459756 PLA2G2DQ9UNK4 145 aa9.89□□□□□ -0.83
COL7A1-203ENST00000459756 TRAV12-1A0A0B4J245 112 aa9.88□□□□□ -0.83
COL7A1-203ENST00000459756 IGLV7-43P04211 117 aa9.87□□□□□ -0.83
COL7A1-203ENST00000459756 KRTAP11-1Q8IUC1 163 aa9.87□□□□□ -0.83
COL7A1-203ENST00000459756 UBE2BP63146 152 aa9.86□□□□□ -0.83
COL7A1-203ENST00000459756 PMCHL2Q9BQD1 86 aa9.86□□□□□ -0.83
COL7A1-203ENST00000459756 MAP1LC3CQ9BXW4 147 aa9.86□□□□□ -0.83
COL7A1-203ENST00000459756 XAGE1AQ9HD64 81 aa9.86□□□□□ -0.83
COL7A1-203ENST00000459756 ODF1Q14990 250 aa9.85□□□□□ -0.83
COL7A1-203ENST00000459756 KRTAP10-8P60410 259 aa9.84□□□□□ -0.83
COL7A1-203ENST00000459756 DIRC1Q969H9 104 aa9.84□□□□□ -0.83
COL7A1-203ENST00000459756 COA6Q5JTJ3 125 aaKnown RBP9.83□□□□□ -0.84
COL7A1-203ENST00000459756 IGLV5-39A0A0G2JS06 123 aa9.82□□□□□ -0.84
COL7A1-203ENST00000459756 LBHQ53QV2 105 aaPredicted RBP9.82□□□□□ -0.84
COL7A1-203ENST00000459756 C22orf24Q9Y442 160 aa9.82□□□□□ -0.84
COL7A1-203ENST00000459756 TP73-AS1Q9UF72 201 aa9.81□□□□□ -0.84
COL7A1-203ENST00000459756 TMEM223A0PJW6 202 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 H0Y9J4 135 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 SYS1-DBNDD2H3BUS1 97 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 DPM2O94777 84 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 S100A6P06703 90 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 KRTDAPP60985 99 aa9.8□□□□□ -0.84
COL7A1-203ENST00000459756 IGKCP01834 107 aa9.79□□□□□ -0.84
COL7A1-203ENST00000459756 PLNP26678 52 aa9.79□□□□□ -0.84
COL7A1-203ENST00000459756 MRPL55Q7Z7F7 128 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms