RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 H3BRM9 83 aa14.55□□□□□ -0.08
CBX3-204ENST00000456948 KRTAP29-1A8MX34 341 aaPredicted RBP14.54□□□□□ -0.08
CBX3-204ENST00000456948 CXCL5P42830 114 aa14.54□□□□□ -0.08
CBX3-204ENST00000456948 C9orf116Q5BN46 136 aaPredicted RBP14.54□□□□□ -0.08
CBX3-204ENST00000456948 PDZD11Q5EBL8 140 aa14.54□□□□□ -0.08
CBX3-204ENST00000456948 C2orf82Q6UX34 121 aa14.54□□□□□ -0.08
CBX3-204ENST00000456948 CBLN2Q8IUK8 224 aa14.54□□□□□ -0.08
CBX3-204ENST00000456948 OXTP01178 125 aa14.53□□□□□ -0.08
CBX3-204ENST00000456948 CHCHD1Q96BP2 118 aaKnown RBP14.53□□□□□ -0.08
CBX3-204ENST00000456948 NDUFC2-KCTD14E9PQ53 114 aa14.52□□□□□ -0.09
CBX3-204ENST00000456948 GAGE2EQ4V326 116 aa14.52□□□□□ -0.09
CBX3-204ENST00000456948 URB1-AS1Q96HZ7 61 aa14.52□□□□□ -0.09
CBX3-204ENST00000456948 GAGE2DQ9UEU5 116 aa14.52□□□□□ -0.09
CBX3-204ENST00000456948 IGLV5-45A0A087WSX0 123 aa14.51□□□□□ -0.09
CBX3-204ENST00000456948 A0A1W2PNN7 141 aa14.51□□□□□ -0.09
CBX3-204ENST00000456948 Q6ZRP5 223 aa14.51□□□□□ -0.09
CBX3-204ENST00000456948 F8VRH5 84 aa14.5□□□□□ -0.09
CBX3-204ENST00000456948 PMCHL1Q16048 86 aa14.5□□□□□ -0.09
CBX3-204ENST00000456948 A0A096LNJ9 63 aa14.49□□□□□ -0.09
CBX3-204ENST00000456948 PRR3P79522 188 aaKnown RBP14.49□□□□□ -0.09
CBX3-204ENST00000456948 BAGE3Q86Y29 109 aa14.49□□□□□ -0.09
CBX3-204ENST00000456948 SMIM1B2RUZ4 78 aa14.48□□□□□ -0.09
CBX3-204ENST00000456948 COX7B2Q8TF08 81 aa14.48□□□□□ -0.09
CBX3-204ENST00000456948 IGLC3P0DOY3 106 aa14.47□□□□□ -0.09
CBX3-204ENST00000456948 HSBP1O75506 76 aa14.45□□□□□ -0.1
CBX3-204ENST00000456948 SPINK8P0C7L1 97 aa14.45□□□□□ -0.1
CBX3-204ENST00000456948 TRGC2P03986 189 aa14.44□□□□□ -0.1
CBX3-204ENST00000456948 HNRNPA3P51991 378 aaKnown RBP14.44□□□□□ -0.1
CBX3-204ENST00000456948 PHF5AQ7RTV0 110 aaKnown RBP14.41□□□□□ -0.1
CBX3-204ENST00000456948 FAM19A5Q7Z5A7 132 aaPredicted RBP14.41□□□□□ -0.1
CBX3-204ENST00000456948 IFI27L1Q96BM0 104 aa14.4□□□□□ -0.1
CBX3-204ENST00000456948 CHTOPQ9Y3Y2 248 aaKnown RBP14.4□□□□□ -0.1
CBX3-204ENST00000456948 FAM168BA1KXE4 195 aa14.39□□□□□ -0.11
CBX3-204ENST00000456948 TMEM170BQ5T4T1 132 aa14.39□□□□□ -0.11
CBX3-204ENST00000456948 SPINK6Q6UWN8 80 aa14.39□□□□□ -0.11
CBX3-204ENST00000456948 ZNF22P17026 224 aaPredicted RBP14.38□□□□□ -0.11
CBX3-204ENST00000456948 TRAV12-1A0A0B4J245 112 aa14.37□□□□□ -0.11
CBX3-204ENST00000456948 SFTA2Q6UW10 78 aa14.37□□□□□ -0.11
CBX3-204ENST00000456948 PKHD1L1Q86WI1 4243 aa14.36□□□□□ -0.11
CBX3-204ENST00000456948 M0QXV9 152 aa14.36□□□□□ -0.11
CBX3-204ENST00000456948 UBE2BP63146 152 aa14.36□□□□□ -0.11
CBX3-204ENST00000456948 C9orf129Q5T035 196 aaKnown RBP14.36□□□□□ -0.11
CBX3-204ENST00000456948 PSORS1C2Q9UIG4 136 aa14.36□□□□□ -0.11
CBX3-204ENST00000456948 IGLV5-39A0A0G2JS06 123 aa14.35□□□□□ -0.11
CBX3-204ENST00000456948 COLCA2A8K830 154 aa14.35□□□□□ -0.11
CBX3-204ENST00000456948 C1orf137Q5JT78 98 aa14.35□□□□□ -0.11
CBX3-204ENST00000456948 REG3GQ6UW15 175 aa14.35□□□□□ -0.11
CBX3-204ENST00000456948 LBHQ53QV2 105 aaPredicted RBP14.34□□□□□ -0.11
CBX3-204ENST00000456948 FAM19A2Q8N3H0 131 aa14.34□□□□□ -0.11
CBX3-204ENST00000456948 XAGE1AQ9HD64 81 aa14.34□□□□□ -0.11
CBX3-204ENST00000456948 C11orf86A6NJI1 115 aa14.33□□□□□ -0.12
CBX3-204ENST00000456948 LEPROTL1O95214 131 aa14.32□□□□□ -0.12
CBX3-204ENST00000456948 HSPB8Q9UJY1 196 aa14.31□□□□□ -0.12
CBX3-204ENST00000456948 SERF1AO75920 110 aa14.3□□□□□ -0.12
CBX3-204ENST00000456948 SRSF9Q13242 221 aaKnown RBP eCLIP14.3□□□□□ -0.12
CBX3-204ENST00000456948 ODF1Q14990 250 aa14.3□□□□□ -0.12
CBX3-204ENST00000456948 LRP1Q07954 4544 aaKnown RBP14.3□□□□□ -0.12
CBX3-204ENST00000456948 COX17Q14061 63 aa14.28□□□□□ -0.12
CBX3-204ENST00000456948 C22orf24Q9Y442 160 aa14.28□□□□□ -0.12
CBX3-204ENST00000456948 FAT3Q8TDW7 4589 aa14.28□□□□□ -0.12
CBX3-204ENST00000456948 TP73-AS1Q9UF72 201 aa14.27□□□□□ -0.13
CBX3-204ENST00000456948 PFN2P35080 140 aa14.26□□□□□ -0.13
CBX3-204ENST00000456948 SERTAD4-AS1Q5TG53 156 aa14.26□□□□□ -0.13
CBX3-204ENST00000456948 KRTAP7-1Q8IUC3 87 aa14.26□□□□□ -0.13
CBX3-204ENST00000456948 H0Y8G0 127 aa14.25□□□□□ -0.13
CBX3-204ENST00000456948 IGLV7-43P04211 117 aa14.25□□□□□ -0.13
CBX3-204ENST00000456948 ERG28Q9UKR5 140 aa14.25□□□□□ -0.13
CBX3-204ENST00000456948 PLA2G2DQ9UNK4 145 aa14.25□□□□□ -0.13
CBX3-204ENST00000456948 TMEM223A0PJW6 202 aa14.24□□□□□ -0.13
CBX3-204ENST00000456948 DIRC1Q969H9 104 aa14.24□□□□□ -0.13
CBX3-204ENST00000456948 MRPL55Q7Z7F7 128 aaKnown RBP14.23□□□□□ -0.13
CBX3-204ENST00000456948 LINC01600Q96MT4 127 aa14.23□□□□□ -0.13
CBX3-204ENST00000456948 FABP4P15090 132 aa14.22□□□□□ -0.13
CBX3-204ENST00000456948 NKAPP1Q8N9T2 125 aa14.22□□□□□ -0.13
CBX3-204ENST00000456948 NUPR1O60356 82 aa14.21□□□□□ -0.13
CBX3-204ENST00000456948 PLNP26678 52 aa14.21□□□□□ -0.13
CBX3-204ENST00000456948 SCO1O75880 301 aa14.2□□□□□ -0.14
CBX3-204ENST00000456948 LINC00310P59036 64 aa14.2□□□□□ -0.14
CBX3-204ENST00000456948 ZNF625Q96I27 306 aaPredicted RBP14.2□□□□□ -0.14
CBX3-204ENST00000456948 RPL24P83731 157 aaKnown RBP14.19□□□□□ -0.14
CBX3-204ENST00000456948 MAP1LC3CQ9BXW4 147 aa14.19□□□□□ -0.14
CBX3-204ENST00000456948 LINC00587B1AMM8 73 aa14.18□□□□□ -0.14
CBX3-204ENST00000456948 ATP6V1G1O75348 118 aa14.18□□□□□ -0.14
CBX3-204ENST00000456948 LINC00158P58513 81 aa14.17□□□□□ -0.14
CBX3-204ENST00000456948 KRTAP11-1Q8IUC1 163 aa14.17□□□□□ -0.14
CBX3-204ENST00000456948 IGLV5-37A0A075B6J1 123 aa14.16□□□□□ -0.14
CBX3-204ENST00000456948 HERVK_113P61574 105 aa14.16□□□□□ -0.14
CBX3-204ENST00000456948 HERV-K104P63124 156 aa14.16□□□□□ -0.14
CBX3-204ENST00000456948 SND1-IT1Q9HBX3 110 aa14.16□□□□□ -0.14
CBX3-204ENST00000456948 DPM2O94777 84 aa14.15□□□□□ -0.14
CBX3-204ENST00000456948 MT1HL1P0DM35 61 aa14.15□□□□□ -0.14
CBX3-204ENST00000456948 HIST1H2BKO60814 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BJP06899 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BOP23527 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BBP33778 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BDP58876 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BCP62807 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST2H2BEQ16778 126 aa14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.14□□□□□ -0.15
CBX3-204ENST00000456948 HIST1H2BHQ93079 126 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms