RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 PRSS2P07478 247 aa12.63□□□□□ -0.39
GTF3A-202ENST00000419181 LINC00614P0C842 121 aa12.63□□□□□ -0.39
GTF3A-202ENST00000419181 PACRGQ96M98 296 aaPredicted RBP12.63□□□□□ -0.39
GTF3A-202ENST00000419181 TOMM7Q9P0U1 55 aa12.63□□□□□ -0.39
GTF3A-202ENST00000419181 IGLV5-45A0A087WSX0 123 aa12.62□□□□□ -0.39
GTF3A-202ENST00000419181 PMVKQ15126 192 aa12.62□□□□□ -0.39
GTF3A-202ENST00000419181 LINC00469Q8N7U9 141 aa12.62□□□□□ -0.39
GTF3A-202ENST00000419181 CKS1BP61024 79 aa12.61□□□□□ -0.39
GTF3A-202ENST00000419181 C6orf226Q5I0X4 101 aa12.61□□□□□ -0.39
GTF3A-202ENST00000419181 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
GTF3A-202ENST00000419181 NDUFC2-KCTD14E9PQ53 114 aa12.6□□□□□ -0.39
GTF3A-202ENST00000419181 GAGE2EQ4V326 116 aa12.6□□□□□ -0.39
GTF3A-202ENST00000419181 GAGE2DQ9UEU5 116 aa12.6□□□□□ -0.39
GTF3A-202ENST00000419181 FAM168BA1KXE4 195 aa12.59□□□□□ -0.39
GTF3A-202ENST00000419181 HBDP02042 147 aa12.59□□□□□ -0.39
GTF3A-202ENST00000419181 RAB5BP61020 215 aa12.58□□□□□ -0.4
GTF3A-202ENST00000419181 PMCHL1Q16048 86 aa12.58□□□□□ -0.4
GTF3A-202ENST00000419181 PHF5AQ7RTV0 110 aaKnown RBP12.58□□□□□ -0.4
GTF3A-202ENST00000419181 CBLN2Q8IUK8 224 aa12.58□□□□□ -0.4
GTF3A-202ENST00000419181 PDZD11Q5EBL8 140 aa12.57□□□□□ -0.4
GTF3A-202ENST00000419181 F8VRH5 84 aa12.56□□□□□ -0.4
GTF3A-202ENST00000419181 CXCL5P42830 114 aa12.56□□□□□ -0.4
GTF3A-202ENST00000419181 C9orf129Q5T035 196 aaKnown RBP12.55□□□□□ -0.4
GTF3A-202ENST00000419181 FAM19A5Q7Z5A7 132 aaPredicted RBP12.55□□□□□ -0.4
GTF3A-202ENST00000419181 KRTAP7-1Q8IUC3 87 aa12.55□□□□□ -0.4
GTF3A-202ENST00000419181 SLC7A5P1Q8MH63 180 aa12.55□□□□□ -0.4
GTF3A-202ENST00000419181 IGLC3P0DOY3 106 aa12.54□□□□□ -0.4
GTF3A-202ENST00000419181 COX7B2Q8TF08 81 aa12.54□□□□□ -0.4
GTF3A-202ENST00000419181 PSORS1C2Q9UIG4 136 aa12.54□□□□□ -0.4
GTF3A-202ENST00000419181 SPINK8P0C7L1 97 aa12.53□□□□□ -0.4
GTF3A-202ENST00000419181 MT1HL1P0DM35 61 aa12.53□□□□□ -0.4
GTF3A-202ENST00000419181 SRSF9Q13242 221 aaKnown RBP eCLIP12.53□□□□□ -0.4
GTF3A-202ENST00000419181 SERTAD4-AS1Q5TG53 156 aa12.53□□□□□ -0.4
GTF3A-202ENST00000419181 SPINK6Q6UWN8 80 aa12.53□□□□□ -0.4
GTF3A-202ENST00000419181 ATP5LO75964 103 aa12.52□□□□□ -0.41
GTF3A-202ENST00000419181 NDUFA6P56556 154 aa12.52□□□□□ -0.41
GTF3A-202ENST00000419181 H3BRM9 83 aa12.51□□□□□ -0.41
GTF3A-202ENST00000419181 CHCHD1Q96BP2 118 aaKnown RBP12.51□□□□□ -0.41
GTF3A-202ENST00000419181 M0QXV9 152 aa12.5□□□□□ -0.41
GTF3A-202ENST00000419181 ZNF22P17026 224 aaPredicted RBP12.49□□□□□ -0.41
GTF3A-202ENST00000419181 KRTAP11-1Q8IUC1 163 aa12.49□□□□□ -0.41
GTF3A-202ENST00000419181 IGLV5-39A0A0G2JS06 123 aa12.48□□□□□ -0.41
GTF3A-202ENST00000419181 C1orf137Q5JT78 98 aa12.48□□□□□ -0.41
GTF3A-202ENST00000419181 BAGE3Q86Y29 109 aa12.47□□□□□ -0.41
GTF3A-202ENST00000419181 XAGE1AQ9HD64 81 aa12.47□□□□□ -0.41
GTF3A-202ENST00000419181 TRGC2P03986 189 aa12.46□□□□□ -0.41
GTF3A-202ENST00000419181 LINC01600Q96MT4 127 aa12.46□□□□□ -0.41
GTF3A-202ENST00000419181 C11orf86A6NJI1 115 aa12.45□□□□□ -0.42
GTF3A-202ENST00000419181 REG3GQ6UW15 175 aa12.44□□□□□ -0.42
GTF3A-202ENST00000419181 UBE2BP63146 152 aa12.43□□□□□ -0.42
GTF3A-202ENST00000419181 IGLV7-43P04211 117 aa12.42□□□□□ -0.42
GTF3A-202ENST00000419181 ODF1Q14990 250 aa12.42□□□□□ -0.42
GTF3A-202ENST00000419181 IFI27L1Q96BM0 104 aa12.42□□□□□ -0.42
GTF3A-202ENST00000419181 CHTOPQ9Y3Y2 248 aaKnown RBP12.42□□□□□ -0.42
GTF3A-202ENST00000419181 TNXBP22105 4242 aa12.42□□□□□ -0.42
GTF3A-202ENST00000419181 TRAV12-1A0A0B4J245 112 aa12.41□□□□□ -0.42
GTF3A-202ENST00000419181 HSBP1O75506 76 aa12.41□□□□□ -0.42
GTF3A-202ENST00000419181 PLA2G2DQ9UNK4 145 aa12.41□□□□□ -0.42
GTF3A-202ENST00000419181 C22orf24Q9Y442 160 aa12.41□□□□□ -0.42
GTF3A-202ENST00000419181 COLCA2A8K830 154 aa12.4□□□□□ -0.42
GTF3A-202ENST00000419181 TMEM170BQ5T4T1 132 aa12.4□□□□□ -0.42
GTF3A-202ENST00000419181 FAM19A2Q8N3H0 131 aa12.4□□□□□ -0.42
GTF3A-202ENST00000419181 HMCN2Q8NDA2 5059 aa12.39□□□□□ -0.43
GTF3A-202ENST00000419181 LINC00310P59036 64 aa12.38□□□□□ -0.43
GTF3A-202ENST00000419181 TP73-AS1Q9UF72 201 aa12.38□□□□□ -0.43
GTF3A-202ENST00000419181 LBHQ53QV2 105 aaPredicted RBP12.37□□□□□ -0.43
GTF3A-202ENST00000419181 SERF1AO75920 110 aa12.36□□□□□ -0.43
GTF3A-202ENST00000419181 KRTAP10-8P60410 259 aa12.35□□□□□ -0.43
GTF3A-202ENST00000419181 MRPL55Q7Z7F7 128 aaKnown RBP12.35□□□□□ -0.43
GTF3A-202ENST00000419181 DIRC1Q969H9 104 aa12.35□□□□□ -0.43
GTF3A-202ENST00000419181 TMEM223A0PJW6 202 aa12.34□□□□□ -0.43
GTF3A-202ENST00000419181 PFN2P35080 140 aa12.34□□□□□ -0.43
GTF3A-202ENST00000419181 SFTA2Q6UW10 78 aa12.34□□□□□ -0.43
GTF3A-202ENST00000419181 ERG28Q9UKR5 140 aa12.34□□□□□ -0.43
GTF3A-202ENST00000419181 ZNF625Q96I27 306 aaPredicted RBP12.33□□□□□ -0.44
GTF3A-202ENST00000419181 IGLV5-37A0A075B6J1 123 aa12.32□□□□□ -0.44
GTF3A-202ENST00000419181 H0Y9J4 135 aa12.32□□□□□ -0.44
GTF3A-202ENST00000419181 COX17Q14061 63 aa12.32□□□□□ -0.44
GTF3A-202ENST00000419181 NUPR1O60356 82 aa12.31□□□□□ -0.44
GTF3A-202ENST00000419181 LEPROTL1O95214 131 aa12.31□□□□□ -0.44
GTF3A-202ENST00000419181 LINC00167Q96N53 147 aa12.3□□□□□ -0.44
GTF3A-202ENST00000419181 SND1-IT1Q9HBX3 110 aa12.29□□□□□ -0.44
GTF3A-202ENST00000419181 H0Y8G0 127 aa12.28□□□□□ -0.44
GTF3A-202ENST00000419181 SCO1O75880 301 aa12.28□□□□□ -0.44
GTF3A-202ENST00000419181 NKAPP1Q8N9T2 125 aa12.27□□□□□ -0.45
GTF3A-202ENST00000419181 GAGE10A6NGK3 116 aa12.26□□□□□ -0.45
GTF3A-202ENST00000419181 RPL37AP8A6NKH3 93 aa12.26□□□□□ -0.45
GTF3A-202ENST00000419181 ZNF861PO60384 105 aa12.26□□□□□ -0.45
GTF3A-202ENST00000419181 HSPB8Q9UJY1 196 aa12.26□□□□□ -0.45
GTF3A-202ENST00000419181 BCE1O60756 84 aa12.24□□□□□ -0.45
GTF3A-202ENST00000419181 KRTAP1-4P0C5Y4 121 aa12.24□□□□□ -0.45
GTF3A-202ENST00000419181 VPREB1P12018 145 aa12.24□□□□□ -0.45
GTF3A-202ENST00000419181 FABP4P15090 132 aa12.24□□□□□ -0.45
GTF3A-202ENST00000419181 PLNP26678 52 aa12.22□□□□□ -0.45
GTF3A-202ENST00000419181 LINC00158P58513 81 aa12.22□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BKO60814 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BJP06899 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BOP23527 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BBP33778 126 aa12.21□□□□□ -0.45
GTF3A-202ENST00000419181 HIST1H2BDP58876 126 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms