RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 A0A087WVE0 104 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 TANC2Q9HCD6 1990 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 MOBPQ13875 183 aa4.3□□□□□ -1.72
SCN1A-203ENST00000409050 WISP2O76076 250 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 ELOF1P60002 83 aaKnown RBP4.29□□□□□ -1.72
SCN1A-203ENST00000409050 C10orf99Q6UWK7 81 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 LOC101927531A0A1B0GV80 90 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 PRR4Q16378 134 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 LINC00337Q8N6G1 96 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 GPR179Q6PRD1 2367 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 A0A1B0GU69 56 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 Q8NBF4 154 aa4.29□□□□□ -1.72
SCN1A-203ENST00000409050 NANOS2P60321 138 aaKnown RBP4.28□□□□□ -1.72
SCN1A-203ENST00000409050 SOSTDC1Q6X4U4 206 aa4.28□□□□□ -1.72
SCN1A-203ENST00000409050 SPATA3Q8NHX4 192 aa4.28□□□□□ -1.72
SCN1A-203ENST00000409050 C1orf134Q5TEV5 83 aa4.28□□□□□ -1.72
SCN1A-203ENST00000409050 SMCR5Q8TEV8 140 aa4.28□□□□□ -1.72
SCN1A-203ENST00000409050 PRO0461Q9UI25 63 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 CACNA1AO00555 2505 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 HIVEP2P31629 2446 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 TRBV7-4A0A0J9YYF1 115 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 CIRBP-AS1Q8TBR5 109 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 ANKHD1Q8IWZ3 2542 aaKnown RBP4.27□□□□□ -1.73
SCN1A-203ENST00000409050 RPL37AP61513 92 aaKnown RBP4.27□□□□□ -1.73
SCN1A-203ENST00000409050 C22orf24Q9Y442 160 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 PRR14LQ5THK1 2151 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 LRP4O75096 1905 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 NOTCH2Q04721 2471 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 Q6ZQT0 140 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 LINC00315P59091 139 aa4.27□□□□□ -1.73
SCN1A-203ENST00000409050 SPAG11AQ6PDA7 123 aa4.26□□□□□ -1.73
SCN1A-203ENST00000409050 Q6ZRU5 148 aa4.26□□□□□ -1.73
SCN1A-203ENST00000409050 PCNX1Q96RV3 2341 aa4.26□□□□□ -1.73
SCN1A-203ENST00000409050 TRAV22A0A0B4J277 110 aa4.26□□□□□ -1.73
SCN1A-203ENST00000409050 LY6G6CO95867 125 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 C18orf65Q6ZTR6 163 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 RETNLBQ9BQ08 111 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 ARHGAP21Q5T5U3 1957 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 PCOTHQ58A44 107 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 C9orf116Q5BN46 136 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-203ENST00000409050 MED12LQ86YW9 2145 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 FAM229AH3BQW9 127 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 PSPHP1O15172 72 aa4.25□□□□□ -1.73
SCN1A-203ENST00000409050 Q6ZRX8 168 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 AVPP01185 164 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 PLA2G2AP14555 144 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 KIAA0087Q14695 138 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 SMIM29Q86T20 159 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 C6orf48Q9UBA6 75 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 DSCAMO60469 2012 aa4.24□□□□□ -1.73
SCN1A-203ENST00000409050 FAM208BQ5VWN6 2430 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 MYO18BQ8IUG5 2567 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 TECTAO75443 2155 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 PTPRQQ9UMZ3 2332 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 Q6ZSN1 163 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 C7orf65Q6ZTY9 151 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 FREM1Q5H8C1 2179 aa4.23□□□□□ -1.73
SCN1A-203ENST00000409050 Q6ZRP5 223 aa4.22□□□□□ -1.73
SCN1A-203ENST00000409050 SMCPP49901 116 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-203ENST00000409050 HCFC1P51610 2035 aa4.22□□□□□ -1.73
SCN1A-203ENST00000409050 KIAA1549Q9HCM3 1950 aa4.22□□□□□ -1.73
SCN1A-203ENST00000409050 C16orf90A8MZG2 172 aa4.22□□□□□ -1.73
SCN1A-203ENST00000409050 LINC00167Q96N53 147 aa4.22□□□□□ -1.73
SCN1A-203ENST00000409050 PLCE1Q9P212 2302 aa4.21□□□□□ -1.73
SCN1A-203ENST00000409050 TNCP24821 2201 aa4.21□□□□□ -1.73
SCN1A-203ENST00000409050 PRR3P79522 188 aaKnown RBP4.21□□□□□ -1.73
SCN1A-203ENST00000409050 PRM2P04554 102 aa4.21□□□□□ -1.74
SCN1A-203ENST00000409050 A8MTW9 85 aa4.21□□□□□ -1.74
SCN1A-203ENST00000409050 A8MWP4 228 aa4.21□□□□□ -1.74
SCN1A-203ENST00000409050 EDN2P20800 178 aa4.21□□□□□ -1.74
SCN1A-203ENST00000409050 KLKP1Q107X0 134 aa4.2□□□□□ -1.74
SCN1A-203ENST00000409050 EML5Q05BV3 1969 aa4.2□□□□□ -1.74
SCN1A-203ENST00000409050 M0R2N4 97 aa4.2□□□□□ -1.74
SCN1A-203ENST00000409050 OXLD1Q5BKU9 147 aa4.2□□□□□ -1.74
SCN1A-203ENST00000409050 IGLV6-57P01721 117 aa4.2□□□□□ -1.74
SCN1A-203ENST00000409050 LINC00313P59037 77 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 SERTAD4-AS1Q5TG53 156 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 PLA2G2DQ9UNK4 145 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 LINC00476Q8WZB0 136 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 PCNX3Q9H6A9 2034 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 ADAMTS20P59510 1910 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 UQCR11O14957 56 aa4.19□□□□□ -1.74
SCN1A-203ENST00000409050 NAV3Q8IVL0 2385 aa4.18□□□□□ -1.74
SCN1A-203ENST00000409050 SPG11Q96JI7 2443 aa4.18□□□□□ -1.74
SCN1A-203ENST00000409050 MUC6Q6W4X9 2439 aa4.18□□□□□ -1.74
SCN1A-203ENST00000409050 PRLHP81277 87 aa4.18□□□□□ -1.74
SCN1A-203ENST00000409050 SSBP3-AS1Q7Z2R9 100 aa4.18□□□□□ -1.74
SCN1A-203ENST00000409050 ATP11AUNQ6ZP68 121 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 MRPL34Q9BQ48 92 aaKnown RBP4.17□□□□□ -1.74
SCN1A-203ENST00000409050 KCNQ1DNQ9H478 68 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 SONP18583 2426 aaKnown RBP4.17□□□□□ -1.74
SCN1A-203ENST00000409050 SPANXA2-OT1Q8N9U9 137 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 DSCAML1Q8TD84 2053 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 IGKV2D-30A0A075B6S6 120 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 IGKV2-30P06310 120 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 DNAH10OSP0CZ25 163 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 PTPRSQ13332 1948 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 TTC28Q96AY4 2481 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 LINC01600Q96MT4 127 aa4.17□□□□□ -1.74
SCN1A-203ENST00000409050 LITAFQ99732 161 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms