RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BRK1Q8WUW1 75 aa6.48□□□□□ -1.37
LIMCH1-202ENST00000381753 NDUFC2-KCTD14E9PQ53 114 aa6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 PRLHP81277 87 aa6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 KIF25-AS1Q9Y6Z4 181 aa6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 NUPR1O60356 82 aa6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 Q8IZM0 81 aa6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 TNRC6BQ9UPQ9 1833 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-202ENST00000381753 A0A0J9YXY3 114 aa6.46□□□□□ -1.37
LIMCH1-202ENST00000381753 CCKP06307 115 aa6.46□□□□□ -1.38
LIMCH1-202ENST00000381753 IGLV4-3A0A075B6K6 122 aa6.46□□□□□ -1.38
LIMCH1-202ENST00000381753 V9GYY9 64 aa6.46□□□□□ -1.38
LIMCH1-202ENST00000381753 MOBPQ13875 183 aa6.45□□□□□ -1.38
LIMCH1-202ENST00000381753 Q6JHZ5 121 aa6.45□□□□□ -1.38
LIMCH1-202ENST00000381753 PTPRBP23467 1997 aa6.45□□□□□ -1.38
LIMCH1-202ENST00000381753 TEN1Q86WV5 123 aa6.45□□□□□ -1.38
LIMCH1-202ENST00000381753 PYGO1Q9Y3Y4 419 aa6.45□□□□□ -1.38
LIMCH1-202ENST00000381753 A8MZ25 164 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 DNAH10OSP0CZ25 163 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 PRR9Q5T870 116 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 Q6ZRU5 148 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 WFDC13Q8IUB5 93 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 RNASE3P12724 160 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 HIGD1BQ9P298 99 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 C22orf24Q9Y442 160 aa6.44□□□□□ -1.38
LIMCH1-202ENST00000381753 SERP2Q8N6R1 65 aa6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 CDC42SE2Q9NRR3 84 aa6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 A0A1B0GXF2 115 aa6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 PHF5AQ7RTV0 110 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 IGLV4-60A0A075B6I1 120 aa6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 SCXQ7RTU7 201 aa6.43□□□□□ -1.38
LIMCH1-202ENST00000381753 ATP5EP2Q5VTU8 51 aa6.42□□□□□ -1.38
LIMCH1-202ENST00000381753 LINC00304Q8N9R0 145 aa6.42□□□□□ -1.38
LIMCH1-202ENST00000381753 Q8NAQ8 132 aa6.42□□□□□ -1.38
LIMCH1-202ENST00000381753 ANKRD17O75179 2603 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-202ENST00000381753 SMCR5Q8TEV8 140 aa6.41□□□□□ -1.38
LIMCH1-202ENST00000381753 A0A087WTM6 91 aa6.41□□□□□ -1.38
LIMCH1-202ENST00000381753 Q6ZQY7 126 aa6.41□□□□□ -1.38
LIMCH1-202ENST00000381753 LINC00643Q86TS7 51 aa6.41□□□□□ -1.38
LIMCH1-202ENST00000381753 TSHBP01222 138 aa6.41□□□□□ -1.38
LIMCH1-202ENST00000381753 WIPF1O43516 503 aa6.4□□□□□ -1.38
LIMCH1-202ENST00000381753 WFDC2Q14508 124 aa6.4□□□□□ -1.38
LIMCH1-202ENST00000381753 FAM30AQ9NZY2 134 aa6.4□□□□□ -1.38
LIMCH1-202ENST00000381753 LCE6AA0A183 80 aa6.4□□□□□ -1.39
LIMCH1-202ENST00000381753 C19orf73Q9NVV2 129 aa6.4□□□□□ -1.39
LIMCH1-202ENST00000381753 SPINK1P00995 79 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 MRPS36P82909 103 aaKnown RBP6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 KRTAP10-3P60369 221 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 EIF4EBP1Q13541 118 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 Q9UF83 564 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 LINC00242Q5T6M2 205 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 FXYD2P54710 66 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 LINC00173Q6ZV60 143 aa6.39□□□□□ -1.39
LIMCH1-202ENST00000381753 ACANP16112 2415 aa6.38□□□□□ -1.39
LIMCH1-202ENST00000381753 TRBV6-5A0A0K0K1A5 114 aa6.38□□□□□ -1.39
LIMCH1-202ENST00000381753 A0A1B0GUV1 79 aa6.38□□□□□ -1.39
LIMCH1-202ENST00000381753 TRBV10-3A0A0K0K1G6 114 aa6.38□□□□□ -1.39
LIMCH1-202ENST00000381753 C10orf91Q5T1B1 145 aa6.38□□□□□ -1.39
LIMCH1-202ENST00000381753 ENHOQ6UWT2 76 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 TANC2Q9HCD6 1990 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 IGKV2D-30A0A075B6S6 120 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 IGKV2-30P06310 120 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 MPLKIPQ8TAP9 179 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 LINC00308Q8TCZ7 52 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 TTTY13Q9BZ97 58 aa6.37□□□□□ -1.39
LIMCH1-202ENST00000381753 TRBV27A0A0K0K1C4 114 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 hDV103S1A0JD37 113 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 SPAG11AQ6PDA7 123 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 Q8N814 137 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 TMEM223A0PJW6 202 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 ZNF22P17026 224 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 C20orf197Q8N268 126 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 A0A087WYN8 130 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 ZNF575Q86XF7 245 aa6.36□□□□□ -1.39
LIMCH1-202ENST00000381753 APLNQ9ULZ1 77 aa6.35□□□□□ -1.39
LIMCH1-202ENST00000381753 FAM240AA0A1B0GVK7 77 aa6.35□□□□□ -1.39
LIMCH1-202ENST00000381753 NRACQ8N912 160 aa6.35□□□□□ -1.39
LIMCH1-202ENST00000381753 Q96NJ1 140 aa6.34□□□□□ -1.39
LIMCH1-202ENST00000381753 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-202ENST00000381753 SDIM1Q6ZPB5 146 aa6.34□□□□□ -1.39
LIMCH1-202ENST00000381753 RBM12B-AS1Q9P1G2 102 aa6.34□□□□□ -1.39
LIMCH1-202ENST00000381753 CPAMD8Q8IZJ3 1885 aa6.34□□□□□ -1.39
LIMCH1-202ENST00000381753 A6NED7 52 aa6.34□□□□□ -1.4
LIMCH1-202ENST00000381753 KRTAP1-3Q8IUG1 177 aa6.34□□□□□ -1.4
LIMCH1-202ENST00000381753 Q8NBF4 154 aa6.33□□□□□ -1.4
LIMCH1-202ENST00000381753 ATP5EP56381 51 aaPredicted RBP6.33□□□□□ -1.4
LIMCH1-202ENST00000381753 TNP2Q05952 138 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 C9orf92A6NGG3 77 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 LINC00694P0DN24 101 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 EML5Q05BV3 1969 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 NDUFC1O43677 76 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 NDUFV3P56181 108 aaKnown RBP6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 C11orf21Q9P2W6 132 aa6.32□□□□□ -1.4
LIMCH1-202ENST00000381753 KRTAP1-1Q07627 177 aa6.31□□□□□ -1.4
LIMCH1-202ENST00000381753 C11orf1Q9H5F2 150 aa6.31□□□□□ -1.4
LIMCH1-202ENST00000381753 PLA2G2DQ9UNK4 145 aa6.31□□□□□ -1.4
LIMCH1-202ENST00000381753 DSCAML1Q8TD84 2053 aa6.31□□□□□ -1.4
LIMCH1-202ENST00000381753 A0A087WSZ3 146 aa6.31□□□□□ -1.4
LIMCH1-202ENST00000381753 C1orf195Q5TG92 126 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 PTH2Q96A98 100 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms