RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 C2orf82Q6UX34 121 aa10.46□□□□□ -0.73
HMGN4-201ENST00000377575 Q8IZM0 81 aa10.46□□□□□ -0.73
HMGN4-201ENST00000377575 TOMM7Q9P0U1 55 aa10.46□□□□□ -0.73
HMGN4-201ENST00000377575 CKS1BP61024 79 aa10.45□□□□□ -0.74
HMGN4-201ENST00000377575 CDKN2A-AS1Q9UH64 79 aa10.45□□□□□ -0.74
HMGN4-201ENST00000377575 TRAPPC1Q9Y5R8 145 aa10.45□□□□□ -0.74
HMGN4-201ENST00000377575 GAGE2EQ4V326 116 aa10.44□□□□□ -0.74
HMGN4-201ENST00000377575 C6orf226Q5I0X4 101 aa10.44□□□□□ -0.74
HMGN4-201ENST00000377575 SERTAD4-AS1Q5TG53 156 aa10.44□□□□□ -0.74
HMGN4-201ENST00000377575 GAGE2DQ9UEU5 116 aa10.44□□□□□ -0.74
HMGN4-201ENST00000377575 TINCRA0A1B0GVN0 87 aa10.43□□□□□ -0.74
HMGN4-201ENST00000377575 NDUFC2-KCTD14E9PQ53 114 aa10.43□□□□□ -0.74
HMGN4-201ENST00000377575 SPINK6Q6UWN8 80 aa10.43□□□□□ -0.74
HMGN4-201ENST00000377575 LINC00469Q8N7U9 141 aa10.43□□□□□ -0.74
HMGN4-201ENST00000377575 PHF5AQ7RTV0 110 aaKnown RBP10.42□□□□□ -0.74
HMGN4-201ENST00000377575 CXCL5P42830 114 aa10.41□□□□□ -0.74
HMGN4-201ENST00000377575 PMVKQ15126 192 aa10.41□□□□□ -0.74
HMGN4-201ENST00000377575 FAM19A5Q7Z5A7 132 aaPredicted RBP10.41□□□□□ -0.74
HMGN4-201ENST00000377575 CST9LQ9H4G1 147 aa10.41□□□□□ -0.74
HMGN4-201ENST00000377575 FAM168BA1KXE4 195 aa10.4□□□□□ -0.74
HMGN4-201ENST00000377575 REG3GQ6UW15 175 aa10.4□□□□□ -0.74
HMGN4-201ENST00000377575 C18orf32Q8TCD1 76 aa10.4□□□□□ -0.74
HMGN4-201ENST00000377575 PSORS1C2Q9UIG4 136 aa10.4□□□□□ -0.74
HMGN4-201ENST00000377575 IGLV5-45A0A087WSX0 123 aa10.39□□□□□ -0.75
HMGN4-201ENST00000377575 SMIM1B2RUZ4 78 aa10.39□□□□□ -0.75
HMGN4-201ENST00000377575 F8VRH5 84 aa10.39□□□□□ -0.75
HMGN4-201ENST00000377575 MT1HL1P0DM35 61 aa10.39□□□□□ -0.75
HMGN4-201ENST00000377575 PDZD11Q5EBL8 140 aa10.39□□□□□ -0.75
HMGN4-201ENST00000377575 LINC00614P0C842 121 aa10.38□□□□□ -0.75
HMGN4-201ENST00000377575 RAB5BP61020 215 aa10.38□□□□□ -0.75
HMGN4-201ENST00000377575 C1orf137Q5JT78 98 aa10.38□□□□□ -0.75
HMGN4-201ENST00000377575 M0QXV9 152 aa10.37□□□□□ -0.75
HMGN4-201ENST00000377575 HBDP02042 147 aa10.37□□□□□ -0.75
HMGN4-201ENST00000377575 SRSF9Q13242 221 aaKnown RBP eCLIP10.37□□□□□ -0.75
HMGN4-201ENST00000377575 LINC01600Q96MT4 127 aa10.37□□□□□ -0.75
HMGN4-201ENST00000377575 A0A096LNJ9 63 aa10.36□□□□□ -0.75
HMGN4-201ENST00000377575 H3BRM9 83 aa10.36□□□□□ -0.75
HMGN4-201ENST00000377575 C9orf129Q5T035 196 aaKnown RBP10.36□□□□□ -0.75
HMGN4-201ENST00000377575 COX7B2Q8TF08 81 aa10.36□□□□□ -0.75
HMGN4-201ENST00000377575 URB1-AS1Q96HZ7 61 aa10.35□□□□□ -0.75
HMGN4-201ENST00000377575 SPINK8P0C7L1 97 aa10.34□□□□□ -0.75
HMGN4-201ENST00000377575 IGLC3P0DOY3 106 aa10.34□□□□□ -0.75
HMGN4-201ENST00000377575 NDUFA6P56556 154 aa10.34□□□□□ -0.75
HMGN4-201ENST00000377575 UBE2BP63146 152 aa10.34□□□□□ -0.75
HMGN4-201ENST00000377575 ATP5LO75964 103 aa10.33□□□□□ -0.76
HMGN4-201ENST00000377575 PMCHL1Q16048 86 aa10.33□□□□□ -0.76
HMGN4-201ENST00000377575 YPEL4Q96NS1 127 aa10.33□□□□□ -0.76
HMGN4-201ENST00000377575 PLA2G2DQ9UNK4 145 aa10.33□□□□□ -0.76
HMGN4-201ENST00000377575 TNXBP22105 4242 aa10.32□□□□□ -0.76
HMGN4-201ENST00000377575 KRTAP7-1Q8IUC3 87 aa10.32□□□□□ -0.76
HMGN4-201ENST00000377575 IGLV7-43P04211 117 aa10.31□□□□□ -0.76
HMGN4-201ENST00000377575 XAGE1AQ9HD64 81 aa10.31□□□□□ -0.76
HMGN4-201ENST00000377575 KRTAP11-1Q8IUC1 163 aa10.29□□□□□ -0.76
HMGN4-201ENST00000377575 DIRC1Q969H9 104 aa10.29□□□□□ -0.76
HMGN4-201ENST00000377575 CHCHD1Q96BP2 118 aaKnown RBP10.29□□□□□ -0.76
HMGN4-201ENST00000377575 ZNF22P17026 224 aaPredicted RBP10.28□□□□□ -0.76
HMGN4-201ENST00000377575 ODF1Q14990 250 aa10.28□□□□□ -0.76
HMGN4-201ENST00000377575 CBLN2Q8IUK8 224 aa10.28□□□□□ -0.76
HMGN4-201ENST00000377575 HMCN2Q8NDA2 5059 aa10.27□□□□□ -0.77
HMGN4-201ENST00000377575 IGLV5-39A0A0G2JS06 123 aa10.27□□□□□ -0.77
HMGN4-201ENST00000377575 LBHQ53QV2 105 aaPredicted RBP10.27□□□□□ -0.77
HMGN4-201ENST00000377575 BAGE3Q86Y29 109 aa10.27□□□□□ -0.77
HMGN4-201ENST00000377575 TP73-AS1Q9UF72 201 aa10.27□□□□□ -0.77
HMGN4-201ENST00000377575 C22orf24Q9Y442 160 aa10.27□□□□□ -0.77
HMGN4-201ENST00000377575 C11orf86A6NJI1 115 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 A6NJY4 79 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 H0Y9J4 135 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 NUPR1O60356 82 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 KRTAP10-8P60410 259 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 TMEM170BQ5T4T1 132 aa10.24□□□□□ -0.77
HMGN4-201ENST00000377575 MRPL55Q7Z7F7 128 aaKnown RBP10.24□□□□□ -0.77
HMGN4-201ENST00000377575 CHTOPQ9Y3Y2 248 aaKnown RBP10.24□□□□□ -0.77
HMGN4-201ENST00000377575 SFTA2Q6UW10 78 aa10.23□□□□□ -0.77
HMGN4-201ENST00000377575 IFI27L1Q96BM0 104 aa10.23□□□□□ -0.77
HMGN4-201ENST00000377575 TRAV12-1A0A0B4J245 112 aa10.22□□□□□ -0.77
HMGN4-201ENST00000377575 HSBP1O75506 76 aa10.22□□□□□ -0.77
HMGN4-201ENST00000377575 TRGC2P03986 189 aa10.2□□□□□ -0.78
HMGN4-201ENST00000377575 PFN2P35080 140 aa10.2□□□□□ -0.78
HMGN4-201ENST00000377575 SLC7A5P1Q8MH63 180 aa10.2□□□□□ -0.78
HMGN4-201ENST00000377575 NKAPP1Q8N9T2 125 aa10.2□□□□□ -0.78
HMGN4-201ENST00000377575 ERG28Q9UKR5 140 aa10.2□□□□□ -0.78
HMGN4-201ENST00000377575 IGLV5-37A0A075B6J1 123 aa10.19□□□□□ -0.78
HMGN4-201ENST00000377575 COX17Q14061 63 aa10.19□□□□□ -0.78
HMGN4-201ENST00000377575 ZNF861PO60384 105 aa10.17□□□□□ -0.78
HMGN4-201ENST00000377575 FAM19A2Q8N3H0 131 aa10.17□□□□□ -0.78
HMGN4-201ENST00000377575 LINC00167Q96N53 147 aa10.17□□□□□ -0.78
HMGN4-201ENST00000377575 TMEM223A0PJW6 202 aa10.16□□□□□ -0.78
HMGN4-201ENST00000377575 ZNF625Q96I27 306 aaPredicted RBP10.16□□□□□ -0.78
HMGN4-201ENST00000377575 IGLV1-50A0A075B6I6 118 aa10.15□□□□□ -0.78
HMGN4-201ENST00000377575 GAGE10A6NGK3 116 aa10.15□□□□□ -0.78
HMGN4-201ENST00000377575 RPL37AP8A6NKH3 93 aa10.15□□□□□ -0.78
HMGN4-201ENST00000377575 BCE1O60756 84 aa10.15□□□□□ -0.78
HMGN4-201ENST00000377575 SND1-IT1Q9HBX3 110 aa10.15□□□□□ -0.78
HMGN4-201ENST00000377575 RPL28P46779 137 aaKnown RBP10.14□□□□□ -0.79
HMGN4-201ENST00000377575 PRR26Q8N8Z3 221 aa10.14□□□□□ -0.79
HMGN4-201ENST00000377575 SERF1AO75920 110 aa10.13□□□□□ -0.79
HMGN4-201ENST00000377575 LEPROTL1O95214 131 aa10.13□□□□□ -0.79
HMGN4-201ENST00000377575 KRTAP1-4P0C5Y4 121 aa10.13□□□□□ -0.79
HMGN4-201ENST00000377575 RPL24P83731 157 aaKnown RBP10.13□□□□□ -0.79
HMGN4-201ENST00000377575 H0Y8G0 127 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms