RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 KRTAP10-9P60411 292 aa4.55□□□□□ -1.68
UPF2-201ENST00000356352 ARHGAP21Q5T5U3 1957 aa4.55□□□□□ -1.68
UPF2-201ENST00000356352 CACNA1HO95180 2353 aa4.55□□□□□ -1.68
UPF2-201ENST00000356352 H3BNG1 76 aa4.55□□□□□ -1.68
UPF2-201ENST00000356352 C10orf142B7Z368 130 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 LINC00310P59036 64 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 H3BPC8 53 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 CRYGAP11844 174 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 ACYP2P14621 99 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 Q6ZSN1 163 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 PRLHP81277 87 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 LINC01546A6NGU7 62 aa4.54□□□□□ -1.68
UPF2-201ENST00000356352 KIAA1549Q9HCM3 1950 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 CREBBPQ92793 2442 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 IGLV5-39A0A0G2JS06 123 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 PSPHP1O15172 72 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 NOTCH3Q9UM47 2321 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 A0A1B0GU69 56 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 PCNX1Q96RV3 2341 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 ATG2AQ2TAZ0 1938 aa4.53□□□□□ -1.68
UPF2-201ENST00000356352 COL5A1P20908 1838 aaPredicted RBP4.52□□□□□ -1.69
UPF2-201ENST00000356352 IGKV2D-30A0A075B6S6 120 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 IGKV2-30P06310 120 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 MDFIQ99750 246 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 LINC00846Q9NV44 126 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 DEFB116Q30KQ4 102 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 KIF25-AS1Q9Y6Z4 181 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 LRP4O75096 1905 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 CEP192Q8TEP8 1941 aa4.52□□□□□ -1.69
UPF2-201ENST00000356352 KIAA0087Q14695 138 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 C11orf72Q8NBR9 251 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 A0A096LNJ9 63 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 Q8NBF4 154 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 MED12LQ86YW9 2145 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 SMIM29Q86T20 159 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 DSCAML1Q8TD84 2053 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 FAM229AH3BQW9 127 aa4.51□□□□□ -1.69
UPF2-201ENST00000356352 SPATA3Q8NHX4 192 aa4.5□□□□□ -1.69
UPF2-201ENST00000356352 TNCP24821 2201 aa4.5□□□□□ -1.69
UPF2-201ENST00000356352 ELOF1P60002 83 aaKnown RBP4.5□□□□□ -1.69
UPF2-201ENST00000356352 LINC00167Q96N53 147 aa4.5□□□□□ -1.69
UPF2-201ENST00000356352 PCNX3Q9H6A9 2034 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 MOBPQ13875 183 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 C6orf48Q9UBA6 75 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 FREM1Q5H8C1 2179 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 SPACA4Q8TDM5 124 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 IGHV3OR16-9A0A0B4J2B5 98 aa4.49□□□□□ -1.69
UPF2-201ENST00000356352 Q6ZRP5 223 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 FAM19A4Q96LR4 140 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 IGLV5-45A0A087WSX0 123 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 LOC110117498A0A087WWA1 95 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 A8MTW9 85 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 SPAG11AQ6PDA7 123 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 PLCE1Q9P212 2302 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 NBASA2RRP1 2371 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 A0A1W2PPR1 153 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 LINC00313P59037 77 aa4.48□□□□□ -1.69
UPF2-201ENST00000356352 FAM208BQ5VWN6 2430 aa4.47□□□□□ -1.69
UPF2-201ENST00000356352 Q6ZRX8 168 aa4.47□□□□□ -1.69
UPF2-201ENST00000356352 C8orf87E5RJ46 101 aa4.47□□□□□ -1.69
UPF2-201ENST00000356352 ANKHD1Q8IWZ3 2542 aaKnown RBP4.46□□□□□ -1.69
UPF2-201ENST00000356352 C16orf90A8MZG2 172 aa4.46□□□□□ -1.69
UPF2-201ENST00000356352 RTL8CO15255 209 aa4.46□□□□□ -1.69
UPF2-201ENST00000356352 PRO0628Q9UI54 55 aa4.46□□□□□ -1.69
UPF2-201ENST00000356352 RAI1Q7Z5J4 1906 aaPredicted RBP4.46□□□□□ -1.69
UPF2-201ENST00000356352 EP400Q96L91 3159 aa4.46□□□□□ -1.7
UPF2-201ENST00000356352 TRAV22A0A0B4J277 110 aa4.46□□□□□ -1.7
UPF2-201ENST00000356352 MUC6Q6W4X9 2439 aa4.46□□□□□ -1.7
UPF2-201ENST00000356352 TYMSOSQ8TAI1 123 aa4.46□□□□□ -1.7
UPF2-201ENST00000356352 PLA2G1BP04054 148 aaKnown RBP4.45□□□□□ -1.7
UPF2-201ENST00000356352 HCFC1P51610 2035 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 NBDYA0A0U1RRE5 68 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 ZFHX2Q9C0A1 2572 aaPredicted RBP4.45□□□□□ -1.7
UPF2-201ENST00000356352 LOC101927531A0A1B0GV80 90 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 LINC00476Q8WZB0 136 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 ADAMTS20P59510 1910 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 PTPRQQ9UMZ3 2332 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 Q6ZQT0 140 aa4.45□□□□□ -1.7
UPF2-201ENST00000356352 GVQW2A0A096LPI5 108 aaPredicted RBP4.44□□□□□ -1.7
UPF2-201ENST00000356352 MED13LQ71F56 2210 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 ATP11AUNQ6ZP68 121 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 TANC2Q9HCD6 1990 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 LINC00315P59091 139 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 CDIP1Q9H305 208 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 CPAMD8Q8IZJ3 1885 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 EPM2AB3EWF7 344 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 PCDH15Q96QU1 1955 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 PTPRSQ13332 1948 aa4.44□□□□□ -1.7
UPF2-201ENST00000356352 RPS28P62857 69 aaKnown RBP4.43□□□□□ -1.7
UPF2-201ENST00000356352 EML5Q05BV3 1969 aa4.43□□□□□ -1.7
UPF2-201ENST00000356352 PHF5AQ7RTV0 110 aaKnown RBP4.43□□□□□ -1.7
UPF2-201ENST00000356352 Q9UF83 564 aa4.43□□□□□ -1.7
UPF2-201ENST00000356352 PRR14LQ5THK1 2151 aa4.43□□□□□ -1.7
UPF2-201ENST00000356352 TRBV7-4A0A0J9YYF1 115 aa4.42□□□□□ -1.7
UPF2-201ENST00000356352 SERTAD4-AS1Q5TG53 156 aa4.41□□□□□ -1.7
UPF2-201ENST00000356352 Q96NJ1 140 aa4.41□□□□□ -1.7
UPF2-201ENST00000356352 A8MWP4 228 aa4.4□□□□□ -1.7
UPF2-201ENST00000356352 WWC2-AS2Q96NR7 200 aa4.4□□□□□ -1.7
UPF2-201ENST00000356352 ERC2-IT1O76042 136 aa4.4□□□□□ -1.71
UPF2-201ENST00000356352 RPL37AP61513 92 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms