RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 XAGE1AQ9HD64 81 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 A8MZ25 164 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 C10orf25Q5T742 122 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 CASC2Q6XLA1 102 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 LINC01006Q8NI28 216 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 C3orf84H3BNL1 204 aa7.38□□□□□ -1.23
CCDC88A-202ENST00000336838 PRO0461Q9UI25 63 aa7.37□□□□□ -1.23
CCDC88A-202ENST00000336838 ZNF462Q96JM2 2506 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 RPL37AP8A6NKH3 93 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 Q8N9L7 120 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 ACANP16112 2415 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 SNURFQ9Y675 71 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 A0A087WYN8 130 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 A6NED7 52 aa7.36□□□□□ -1.23
CCDC88A-202ENST00000336838 C7orf33Q8WU49 177 aa7.35□□□□□ -1.23
CCDC88A-202ENST00000336838 LINC00575Q6W349 94 aa7.35□□□□□ -1.23
CCDC88A-202ENST00000336838 WFDC10BQ8IUB3 73 aa7.35□□□□□ -1.23
CCDC88A-202ENST00000336838 FHL2Q14192 279 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 Q8N2B8 174 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 COX6A2Q02221 97 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 C1orf137Q5JT78 98 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 C1orf195Q5TG92 126 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 Q8N3U1 123 aa7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 FAM19A5Q7Z5A7 132 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-202ENST00000336838 hDV103S1A0JD37 113 aa7.33□□□□□ -1.24
CCDC88A-202ENST00000336838 REG3GQ6UW15 175 aa7.33□□□□□ -1.24
CCDC88A-202ENST00000336838 LOC110117498A0A087WWA1 95 aa7.33□□□□□ -1.24
CCDC88A-202ENST00000336838 IGKV2-24A0A0C4DH68 120 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 C10orf99Q6UWK7 81 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 C11orf72Q8NBR9 251 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 WFDC11Q8NEX6 87 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 IGKV2-28A0A075B6P5 120 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 IGKV2D-28P01615 120 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 POLQO75417 2590 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 TMEM254Q8TBM7 123 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 LINC01547P58512 204 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 SCXQ7RTU7 201 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 LINC00337Q8N6G1 96 aa7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-202ENST00000336838 PRO0628Q9UI54 55 aa7.31□□□□□ -1.24
CCDC88A-202ENST00000336838 LINC00315P59091 139 aa7.3□□□□□ -1.24
CCDC88A-202ENST00000336838 LIMD2Q9BT23 127 aa7.3□□□□□ -1.24
CCDC88A-202ENST00000336838 PRB1P04280 392 aa7.3□□□□□ -1.24
CCDC88A-202ENST00000336838 LOC100131303A0A0U1RQF7 123 aa7.3□□□□□ -1.24
CCDC88A-202ENST00000336838 H3BPC8 53 aa7.3□□□□□ -1.24
CCDC88A-202ENST00000336838 CELA1Q9UNI1 258 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 IGHV3OR16-9A0A0B4J2B5 98 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 H3BNG1 76 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 TP53AIP1Q9HCN2 124 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 ERC2-IT1O76042 136 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 UNQ6190/PRO20217Q6UXQ8 127 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 ZNF843Q8N446 348 aa7.29□□□□□ -1.24
CCDC88A-202ENST00000336838 FASNP49327 2511 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-202ENST00000336838 Q6ZVQ6 151 aa7.28□□□□□ -1.24
CCDC88A-202ENST00000336838 LINC00846Q9NV44 126 aa7.28□□□□□ -1.24
CCDC88A-202ENST00000336838 HCG22E2RYF7 251 aa7.28□□□□□ -1.24
CCDC88A-202ENST00000336838 WFDC10AQ9H1F0 79 aa7.27□□□□□ -1.25
CCDC88A-202ENST00000336838 FAM30AQ9NZY2 134 aa7.27□□□□□ -1.25
CCDC88A-202ENST00000336838 ESRGQ1W209 222 aa7.27□□□□□ -1.25
CCDC88A-202ENST00000336838 NUPR2A6NF83 97 aa7.26□□□□□ -1.25
CCDC88A-202ENST00000336838 IGLV4-60A0A075B6I1 120 aa7.26□□□□□ -1.25
CCDC88A-202ENST00000336838 SMCPP49901 116 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-202ENST00000336838 A0A0U1RQV1 116 aa7.25□□□□□ -1.25
CCDC88A-202ENST00000336838 C18orf65Q6ZTR6 163 aa7.25□□□□□ -1.25
CCDC88A-202ENST00000336838 WFDC13Q8IUB5 93 aa7.24□□□□□ -1.25
CCDC88A-202ENST00000336838 HRCT1Q6UXD1 115 aa7.24□□□□□ -1.25
CCDC88A-202ENST00000336838 PLAC8L1A1L4L8 177 aa7.24□□□□□ -1.25
CCDC88A-202ENST00000336838 AVPP01185 164 aa7.23□□□□□ -1.25
CCDC88A-202ENST00000336838 LINC00482Q8N8I6 264 aa7.23□□□□□ -1.25
CCDC88A-202ENST00000336838 IGHV4-30-4P0DP06 118 aa7.23□□□□□ -1.25
CCDC88A-202ENST00000336838 PMAIP1Q13794 54 aa7.23□□□□□ -1.25
CCDC88A-202ENST00000336838 Q6ZSN1 163 aa7.23□□□□□ -1.25
CCDC88A-202ENST00000336838 PRB2P02812 416 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-202ENST00000336838 USP24Q9UPU5 2620 aa7.22□□□□□ -1.25
CCDC88A-202ENST00000336838 A0A087WVE0 104 aa7.22□□□□□ -1.25
CCDC88A-202ENST00000336838 GVQW2A0A096LPI5 108 aaPredicted RBP7.21□□□□□ -1.25
CCDC88A-202ENST00000336838 FHL3Q13643 280 aa7.21□□□□□ -1.25
CCDC88A-202ENST00000336838 LY6G6DO95868 133 aa7.21□□□□□ -1.25
CCDC88A-202ENST00000336838 INAFM1C9JVW0 142 aa7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 CDSNQ15517 529 aa7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 ELOF1P60002 83 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 C9orf116Q5BN46 136 aaPredicted RBP7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 LINC01556Q5JQF7 62 aa7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 LINC00208Q96KT6 92 aa7.2□□□□□ -1.26
CCDC88A-202ENST00000336838 LYPD5Q6UWN5 251 aa7.19□□□□□ -1.26
CCDC88A-202ENST00000336838 H0Y9P7 68 aa7.19□□□□□ -1.26
CCDC88A-202ENST00000336838 Q6ZQT0 140 aa7.19□□□□□ -1.26
CCDC88A-202ENST00000336838 A0A0J9YWU9 116 aa7.19□□□□□ -1.26
CCDC88A-202ENST00000336838 Q9BRP9 147 aa7.19□□□□□ -1.26
CCDC88A-202ENST00000336838 EPG5Q9HCE0 2579 aa7.18□□□□□ -1.26
CCDC88A-202ENST00000336838 FLNAP21333 2647 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-202ENST00000336838 PRM2P04554 102 aa7.18□□□□□ -1.26
CCDC88A-202ENST00000336838 C6orf223Q8N319 242 aa7.17□□□□□ -1.26
CCDC88A-202ENST00000336838 BPTFQ12830 3046 aa7.17□□□□□ -1.26
CCDC88A-202ENST00000336838 PRR3P79522 188 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-202ENST00000336838 A8MTW9 85 aa7.16□□□□□ -1.26
CCDC88A-202ENST00000336838 LITAFQ99732 161 aa7.16□□□□□ -1.26
CCDC88A-202ENST00000336838 EDN2P20800 178 aa7.16□□□□□ -1.26
CCDC88A-202ENST00000336838 DNAH12Q6ZR08 3092 aa7.16□□□□□ -1.26
CCDC88A-202ENST00000336838 SPATA3Q8NHX4 192 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms