RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 TMEM18Q96B42 140 aa8.43□□□□□ -1.06
SNX1-214ENST00000625244 SMIM2Q9BVW6 85 aa8.43□□□□□ -1.06
SNX1-214ENST00000625244 TGIF2-C20orf24A0A0A6YYL0 155 aa8.42□□□□□ -1.06
SNX1-214ENST00000625244 FABP9Q0Z7S8 132 aa8.42□□□□□ -1.06
SNX1-214ENST00000625244 MRPL18Q9H0U6 180 aaKnown RBP8.42□□□□□ -1.06
SNX1-214ENST00000625244 TSHBP01222 138 aa8.41□□□□□ -1.06
SNX1-214ENST00000625244 RNASEKQ6P5S7 137 aaKnown RBP8.41□□□□□ -1.06
SNX1-214ENST00000625244 TMEM101Q96IK0 257 aa8.41□□□□□ -1.06
SNX1-214ENST00000625244 TRAPPC1Q9Y5R8 145 aa8.41□□□□□ -1.06
SNX1-214ENST00000625244 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.4□□□□□ -1.06
SNX1-214ENST00000625244 TRAV8-4A0A0B4J246 113 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 LOC389332A0A1B0GUA5 103 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 A0A1B0GUV1 79 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 IGKV2-29A2NJV5 120 aaPredicted RBP8.4□□□□□ -1.06
SNX1-214ENST00000625244 ZNF25P17030 456 aaPredicted RBP8.4□□□□□ -1.06
SNX1-214ENST00000625244 KIAA1644Q3SXP7 199 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 HIGD2BQ4VC39 106 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 CBLN2Q8IUK8 224 aa8.4□□□□□ -1.06
SNX1-214ENST00000625244 NXT2Q9NPJ8 142 aaKnown RBP8.4□□□□□ -1.06
SNX1-214ENST00000625244 C20orf203Q8NBC4 194 aa8.39□□□□□ -1.07
SNX1-214ENST00000625244 PRSS47A8MTI9 375 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 K7EMI3 77 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 FGF6P10767 208 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 ESDP10768 282 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 OR5A1Q8NGJ0 315 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 LINC00474Q9P2X8 69 aa8.38□□□□□ -1.07
SNX1-214ENST00000625244 G0S2P27469 103 aa8.37□□□□□ -1.07
SNX1-214ENST00000625244 Q8N8P6 123 aa8.37□□□□□ -1.07
SNX1-214ENST00000625244 ORMDL2Q53FV1 153 aa8.36□□□□□ -1.07
SNX1-214ENST00000625244 CFAP161Q6P656 301 aa8.36□□□□□ -1.07
SNX1-214ENST00000625244 ALKBH7Q9BT30 221 aaPredicted RBP8.36□□□□□ -1.07
SNX1-214ENST00000625244 IGLV4-60A0A075B6I1 120 aa8.35□□□□□ -1.07
SNX1-214ENST00000625244 LCE2BO14633 110 aa8.35□□□□□ -1.07
SNX1-214ENST00000625244 MRPL52Q86TS9 123 aaKnown RBP8.35□□□□□ -1.07
SNX1-214ENST00000625244 GAGE12HA6NDE8 117 aa8.34□□□□□ -1.07
SNX1-214ENST00000625244 S100A1P23297 94 aa8.34□□□□□ -1.07
SNX1-214ENST00000625244 C1orf137Q5JT78 98 aa8.34□□□□□ -1.07
SNX1-214ENST00000625244 FA2HQ7L5A8 372 aa8.34□□□□□ -1.07
SNX1-214ENST00000625244 YPEL4Q96NS1 127 aa8.34□□□□□ -1.07
SNX1-214ENST00000625244 IGLV1-50A0A075B6I6 118 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 IGKV3OR2-268A0A0C4DH90 116 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 IFI27P40305 119 aaPredicted RBP8.33□□□□□ -1.08
SNX1-214ENST00000625244 DIRC1Q969H9 104 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 TIMM21Q9BVV7 248 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 SPANXA1Q9NS26 97 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 UBE2D4Q9Y2X8 147 aa8.33□□□□□ -1.08
SNX1-214ENST00000625244 CSDC2Q9Y534 153 aaKnown RBP8.33□□□□□ -1.08
SNX1-214ENST00000625244 KRTAP1-4P0C5Y4 121 aa8.32□□□□□ -1.08
SNX1-214ENST00000625244 RAB5BP61020 215 aa8.32□□□□□ -1.08
SNX1-214ENST00000625244 GVQW2A0A096LPI5 108 aaPredicted RBP8.31□□□□□ -1.08
SNX1-214ENST00000625244 A0A1W2PNN7 141 aa8.31□□□□□ -1.08
SNX1-214ENST00000625244 LINC01549A6NIU2 74 aa8.31□□□□□ -1.08
SNX1-214ENST00000625244 RPL39P62891 51 aaKnown RBP8.31□□□□□ -1.08
SNX1-214ENST00000625244 SS18Q15532 418 aa8.31□□□□□ -1.08
SNX1-214ENST00000625244 C2orf66Q6UXQ4 117 aa8.31□□□□□ -1.08
SNX1-214ENST00000625244 CDC42SE2Q9NRR3 84 aa8.31□□□□□ -1.08
SNX1-214ENST00000625244 H0Y9J4 135 aa8.3□□□□□ -1.08
SNX1-214ENST00000625244 Q6ZN92 141 aa8.3□□□□□ -1.08
SNX1-214ENST00000625244 TSPAN13O95857 204 aa8.29□□□□□ -1.08
SNX1-214ENST00000625244 PAPPA-AS1Q5QFB9 102 aa8.29□□□□□ -1.08
SNX1-214ENST00000625244 C18orf32Q8TCD1 76 aa8.29□□□□□ -1.08
SNX1-214ENST00000625244 CCL25O15444 150 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 ATP6V1G1O75348 118 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 SCO1O75880 301 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 TRGC2P03986 189 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 IGLV7-43P04211 117 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 LINC00614P0C842 121 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 MRPS36P82909 103 aaKnown RBP8.28□□□□□ -1.08
SNX1-214ENST00000625244 Q6ZUT4 128 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 LINC00526Q96FQ7 95 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 C2orf88Q9BSF0 95 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 PYGO1Q9Y3Y4 419 aa8.28□□□□□ -1.08
SNX1-214ENST00000625244 LINC00959A0A1B0GUT2 108 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 COLCA2A8K830 154 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 NPSP0C0P6 89 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 UBE2D1P51668 147 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 PTTG1IPP53801 180 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 RNASE13Q5GAN3 156 aaKnown RBP8.27□□□□□ -1.09
SNX1-214ENST00000625244 CHCHD10Q8WYQ3 142 aaPredicted RBP8.27□□□□□ -1.09
SNX1-214ENST00000625244 TMEM141Q96I45 108 aa8.27□□□□□ -1.09
SNX1-214ENST00000625244 TRAV13-1A0A0B4J241 112 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 LINC01546A6NGU7 62 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 IFITM10A6NMD0 228 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 C1orf196B1AJZ1 125 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 XCL1P47992 114 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 TEX43Q6ZNM6 134 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 BAGE3Q86Y29 109 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 TOMM6Q96B49 74 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 CARD19Q96LW7 228 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 SCGB3A1Q96QR1 104 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 PKIGQ9Y2B9 76 aa8.26□□□□□ -1.09
SNX1-214ENST00000625244 GAGE2BQ13066 116 aa8.25□□□□□ -1.09
SNX1-214ENST00000625244 PHF5AQ7RTV0 110 aaKnown RBP8.25□□□□□ -1.09
SNX1-214ENST00000625244 VCX2Q9H322 139 aa8.25□□□□□ -1.09
SNX1-214ENST00000625244 IGLV4-3A0A075B6K6 122 aa8.24□□□□□ -1.09
SNX1-214ENST00000625244 HBDP02042 147 aa8.24□□□□□ -1.09
SNX1-214ENST00000625244 RPL13AP40429 203 aaKnown RBP8.24□□□□□ -1.09
SNX1-214ENST00000625244 LINC01547P58512 204 aaPredicted RBP8.24□□□□□ -1.09
SNX1-214ENST00000625244 ERASQ7Z444 233 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms