RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 IGHV1-58A0A0C4DH39 117 aa12.53□□□□□ -0.4
SHKBP1-221ENST00000599833 UBE2D1P51668 147 aa12.53□□□□□ -0.4
SHKBP1-221ENST00000599833 COX6A2Q02221 97 aa12.53□□□□□ -0.4
SHKBP1-221ENST00000599833 LINC00242Q5T6M2 205 aa12.53□□□□□ -0.4
SHKBP1-221ENST00000599833 TIMM17AQ99595 171 aa12.53□□□□□ -0.4
SHKBP1-221ENST00000599833 SRRM2Q9UQ35 2752 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-221ENST00000599833 PANO1I0J062 215 aa12.52□□□□□ -0.41
SHKBP1-221ENST00000599833 FAM19A3Q7Z5A8 133 aa12.52□□□□□ -0.41
SHKBP1-221ENST00000599833 LINC00526Q96FQ7 95 aa12.52□□□□□ -0.41
SHKBP1-221ENST00000599833 COX7A2LO14548 114 aa12.51□□□□□ -0.41
SHKBP1-221ENST00000599833 C5orf38Q86SI9 138 aa12.51□□□□□ -0.41
SHKBP1-221ENST00000599833 TEX43Q6ZNM6 134 aa12.5□□□□□ -0.41
SHKBP1-221ENST00000599833 SCXQ7RTU7 201 aa12.5□□□□□ -0.41
SHKBP1-221ENST00000599833 COLCA2A8K830 154 aa12.49□□□□□ -0.41
SHKBP1-221ENST00000599833 CIRBPQ14011 172 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-221ENST00000599833 ERASQ7Z444 233 aa12.49□□□□□ -0.41
SHKBP1-221ENST00000599833 AP5S1Q9NUS5 200 aa12.49□□□□□ -0.41
SHKBP1-221ENST00000599833 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.49□□□□□ -0.41
SHKBP1-221ENST00000599833 FA2HQ7L5A8 372 aa12.48□□□□□ -0.41
SHKBP1-221ENST00000599833 CHAC1Q9BUX1 264 aa12.48□□□□□ -0.41
SHKBP1-221ENST00000599833 MYCBP2O75592 4640 aa12.47□□□□□ -0.41
SHKBP1-221ENST00000599833 LINC00614P0C842 121 aa12.47□□□□□ -0.41
SHKBP1-221ENST00000599833 G0S2P27469 103 aa12.47□□□□□ -0.41
SHKBP1-221ENST00000599833 VCX2Q9H322 139 aa12.47□□□□□ -0.41
SHKBP1-221ENST00000599833 IGHV3-64A0A075B6Q5 118 aa12.46□□□□□ -0.41
SHKBP1-221ENST00000599833 A0A087WZ39 114 aa12.46□□□□□ -0.41
SHKBP1-221ENST00000599833 CIRBP-AS1Q8TBR5 109 aa12.46□□□□□ -0.41
SHKBP1-221ENST00000599833 IGLV4-69A0A075B6H9 119 aa12.45□□□□□ -0.42
SHKBP1-221ENST00000599833 SMR3BP02814 79 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-221ENST00000599833 Q6ZN92 141 aa12.45□□□□□ -0.42
SHKBP1-221ENST00000599833 SCGB3A1Q96QR1 104 aa12.45□□□□□ -0.42
SHKBP1-221ENST00000599833 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-221ENST00000599833 SCO1O75880 301 aa12.44□□□□□ -0.42
SHKBP1-221ENST00000599833 TRGC2P03986 189 aa12.44□□□□□ -0.42
SHKBP1-221ENST00000599833 MALP21145 153 aa12.44□□□□□ -0.42
SHKBP1-221ENST00000599833 PDZD11Q5EBL8 140 aa12.44□□□□□ -0.42
SHKBP1-221ENST00000599833 LINC01549A6NIU2 74 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 CHTF8P0CG12 524 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 KIAA0087Q14695 138 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 PMCHL1Q16048 86 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 OR10D4PQ8NGN7 298 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 C2orf88Q9BSF0 95 aa12.43□□□□□ -0.42
SHKBP1-221ENST00000599833 LINC00310P59036 64 aa12.42□□□□□ -0.42
SHKBP1-221ENST00000599833 Q6ZRU5 148 aa12.42□□□□□ -0.42
SHKBP1-221ENST00000599833 C2orf48Q96LS8 159 aa12.42□□□□□ -0.42
SHKBP1-221ENST00000599833 ZNF561-AS1K7EIQ3 104 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 SPAG11BQ08648 103 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 SYCNQ0VAF6 134 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 LINC01561Q8N1V8 128 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 SPACA4Q8TDM5 124 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 ORAOV1Q8WV07 137 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 CARD19Q96LW7 228 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 CST9LQ9H4G1 147 aa12.41□□□□□ -0.42
SHKBP1-221ENST00000599833 A0A0J9YXV3 536 aa12.4□□□□□ -0.42
SHKBP1-221ENST00000599833 APOMO95445 188 aa12.4□□□□□ -0.42
SHKBP1-221ENST00000599833 PAPPA-AS1Q5QFB9 102 aa12.4□□□□□ -0.42
SHKBP1-221ENST00000599833 Q5VSD8 79 aa12.4□□□□□ -0.42
SHKBP1-221ENST00000599833 HBDP02042 147 aa12.39□□□□□ -0.43
SHKBP1-221ENST00000599833 IGLV5-45A0A087WSX0 123 aa12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 A0A096LNI7 61 aa12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 KRTAP10-4P60372 401 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 RAB5BP61020 215 aa12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 C10orf25Q5T742 122 aa12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 CHCHD1Q96BP2 118 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 CDKN2A-AS1Q9UH64 79 aa12.38□□□□□ -0.43
SHKBP1-221ENST00000599833 FAT3Q8TDW7 4589 aa12.37□□□□□ -0.43
SHKBP1-221ENST00000599833 EPM2AB3EWF7 344 aa12.37□□□□□ -0.43
SHKBP1-221ENST00000599833 PMVKQ15126 192 aa12.37□□□□□ -0.43
SHKBP1-221ENST00000599833 TINCRA0A1B0GVN0 87 aa12.36□□□□□ -0.43
SHKBP1-221ENST00000599833 HERVK_113P63121 156 aa12.36□□□□□ -0.43
SHKBP1-221ENST00000599833 CAMK2N2Q96S95 79 aa12.36□□□□□ -0.43
SHKBP1-221ENST00000599833 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-221ENST00000599833 LINC00528Q8N1L1 170 aa12.35□□□□□ -0.43
SHKBP1-221ENST00000599833 MRPL35Q9NZE8 188 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-221ENST00000599833 A0A087WYN8 130 aa12.34□□□□□ -0.43
SHKBP1-221ENST00000599833 RNF151Q2KHN1 245 aa12.34□□□□□ -0.43
SHKBP1-221ENST00000599833 UNQ6190/PRO20217Q6UXQ8 127 aa12.34□□□□□ -0.43
SHKBP1-221ENST00000599833 C6orf48Q9UBA6 75 aa12.34□□□□□ -0.43
SHKBP1-221ENST00000599833 F8WDY8 70 aa12.33□□□□□ -0.44
SHKBP1-221ENST00000599833 SEC11AP67812 179 aa12.33□□□□□ -0.44
SHKBP1-221ENST00000599833 PLAC8Q9NZF1 115 aa12.33□□□□□ -0.44
SHKBP1-221ENST00000599833 SMIM1B2RUZ4 78 aa12.32□□□□□ -0.44
SHKBP1-221ENST00000599833 NUPR1O60356 82 aa12.32□□□□□ -0.44
SHKBP1-221ENST00000599833 IGLC3P0DOY3 106 aa12.32□□□□□ -0.44
SHKBP1-221ENST00000599833 LRP1Q07954 4544 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-221ENST00000599833 GEMIN7Q9H840 131 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-221ENST00000599833 IGKV2-24A0A0C4DH68 120 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 NDUFA1O15239 70 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 SERF1AO75920 110 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 ATP5LO75964 103 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 PTTG1IPP53801 180 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 C2orf82Q6UX34 121 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 Q8IZM0 81 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 FAM19A2Q8N3H0 131 aa12.3□□□□□ -0.44
SHKBP1-221ENST00000599833 LOC107984640A0A0U1RRK4 108 aa12.29□□□□□ -0.44
SHKBP1-221ENST00000599833 FAM229AH3BQW9 127 aa12.29□□□□□ -0.44
SHKBP1-221ENST00000599833 BAGE3Q86Y29 109 aa12.29□□□□□ -0.44
SHKBP1-221ENST00000599833 LINC00469Q8N7U9 141 aa12.29□□□□□ -0.44
SHKBP1-221ENST00000599833 TLX1NBP0CAT3 122 aa12.28□□□□□ -0.44
SHKBP1-221ENST00000599833 MAJINQ3KP22 176 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms