RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 A0A096LNI7 61 aa11.69□□□□□ -0.54
SHKBP1-202ENST00000593764 IGKV2-24A0A0C4DH68 120 aa11.69□□□□□ -0.54
SHKBP1-202ENST00000593764 KIAA1644Q3SXP7 199 aa11.69□□□□□ -0.54
SHKBP1-202ENST00000593764 LRP1Q07954 4544 aaKnown RBP11.69□□□□□ -0.54
SHKBP1-202ENST00000593764 IFITM10A6NMD0 228 aa11.68□□□□□ -0.54
SHKBP1-202ENST00000593764 MAJINQ3KP22 176 aa11.68□□□□□ -0.54
SHKBP1-202ENST00000593764 CARHSP1Q9Y2V2 147 aaKnown RBP11.68□□□□□ -0.54
SHKBP1-202ENST00000593764 C2orf66Q6UXQ4 117 aa11.67□□□□□ -0.54
SHKBP1-202ENST00000593764 Q6ZRU5 148 aa11.67□□□□□ -0.54
SHKBP1-202ENST00000593764 TMEM141Q96I45 108 aa11.67□□□□□ -0.54
SHKBP1-202ENST00000593764 NXT2Q9NPJ8 142 aaKnown RBP11.67□□□□□ -0.54
SHKBP1-202ENST00000593764 CYSLTR1Q9Y271 337 aa11.67□□□□□ -0.54
SHKBP1-202ENST00000593764 K7EMI3 77 aa11.66□□□□□ -0.54
SHKBP1-202ENST00000593764 HNRNPA3P51991 378 aaKnown RBP11.66□□□□□ -0.54
SHKBP1-202ENST00000593764 ORMDL2Q53FV1 153 aa11.66□□□□□ -0.54
SHKBP1-202ENST00000593764 C2orf48Q96LS8 159 aa11.66□□□□□ -0.54
SHKBP1-202ENST00000593764 GNB1LQ9BYB4 327 aa11.66□□□□□ -0.54
SHKBP1-202ENST00000593764 APOMO95445 188 aa11.65□□□□□ -0.54
SHKBP1-202ENST00000593764 S100PP25815 95 aa11.65□□□□□ -0.54
SHKBP1-202ENST00000593764 LINC00242Q5T6M2 205 aa11.65□□□□□ -0.54
SHKBP1-202ENST00000593764 STPG4Q8N801 248 aa11.65□□□□□ -0.54
SHKBP1-202ENST00000593764 FAT3Q8TDW7 4589 aa11.65□□□□□ -0.54
SHKBP1-202ENST00000593764 IGIPA6NJ69 53 aa11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 KRTAP29-1A8MX34 341 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 RHEBQ15382 184 aa11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 ZC2HC1BQ5TFG8 222 aa11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 OR10D4PQ8NGN7 298 aa11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 CAMK2N2Q96S95 79 aa11.64□□□□□ -0.55
SHKBP1-202ENST00000593764 SPAG11BQ08648 103 aa11.63□□□□□ -0.55
SHKBP1-202ENST00000593764 LINC00173Q6ZV60 143 aa11.63□□□□□ -0.55
SHKBP1-202ENST00000593764 AMELXQ99217 191 aa11.63□□□□□ -0.55
SHKBP1-202ENST00000593764 RPS10P5Q9NQ39 176 aa11.63□□□□□ -0.55
SHKBP1-202ENST00000593764 LINC00474Q9P2X8 69 aa11.63□□□□□ -0.55
SHKBP1-202ENST00000593764 UBE2D1P51668 147 aa11.62□□□□□ -0.55
SHKBP1-202ENST00000593764 TEX43Q6ZNM6 134 aa11.62□□□□□ -0.55
SHKBP1-202ENST00000593764 ORAOV1Q8WV07 137 aa11.62□□□□□ -0.55
SHKBP1-202ENST00000593764 ALKBH7Q9BT30 221 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-202ENST00000593764 PKIGQ9Y2B9 76 aa11.62□□□□□ -0.55
SHKBP1-202ENST00000593764 A0A087WZ39 114 aa11.61□□□□□ -0.55
SHKBP1-202ENST00000593764 LOC107984640A0A0U1RRK4 108 aa11.61□□□□□ -0.55
SHKBP1-202ENST00000593764 NPSP0C0P6 89 aa11.61□□□□□ -0.55
SHKBP1-202ENST00000593764 PTTG1IPP53801 180 aa11.61□□□□□ -0.55
SHKBP1-202ENST00000593764 TGIF2-C20orf24A0A0A6YYL0 155 aa11.6□□□□□ -0.55
SHKBP1-202ENST00000593764 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.6□□□□□ -0.55
SHKBP1-202ENST00000593764 TOMM6Q96B49 74 aa11.6□□□□□ -0.55
SHKBP1-202ENST00000593764 VCX2Q9H322 139 aa11.6□□□□□ -0.55
SHKBP1-202ENST00000593764 A0A0J9YXV3 536 aa11.59□□□□□ -0.55
SHKBP1-202ENST00000593764 J3QL48 77 aa11.59□□□□□ -0.55
SHKBP1-202ENST00000593764 RNF151Q2KHN1 245 aa11.59□□□□□ -0.55
SHKBP1-202ENST00000593764 COX19Q49B96 90 aa11.59□□□□□ -0.55
SHKBP1-202ENST00000593764 Q6ZN92 141 aa11.59□□□□□ -0.55
SHKBP1-202ENST00000593764 LINC01546A6NGU7 62 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 F8WDY8 70 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 G0S2P27469 103 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 GAGE2BQ13066 116 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 KIAA0087Q14695 138 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 C10orf25Q5T742 122 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 C2orf88Q9BSF0 95 aa11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 MRPL18Q9H0U6 180 aaKnown RBP11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 MRPL35Q9NZE8 188 aaKnown RBP11.58□□□□□ -0.56
SHKBP1-202ENST00000593764 MT-ND6P03923 174 aa11.57□□□□□ -0.56
SHKBP1-202ENST00000593764 FAM19A3Q7Z5A8 133 aa11.57□□□□□ -0.56
SHKBP1-202ENST00000593764 C7orf33Q8WU49 177 aa11.57□□□□□ -0.56
SHKBP1-202ENST00000593764 TIMM17AQ99595 171 aa11.57□□□□□ -0.56
SHKBP1-202ENST00000593764 OXTP01178 125 aa11.56□□□□□ -0.56
SHKBP1-202ENST00000593764 APOC3P02656 99 aa11.56□□□□□ -0.56
SHKBP1-202ENST00000593764 FABP9Q0Z7S8 132 aa11.56□□□□□ -0.56
SHKBP1-202ENST00000593764 UNQ6190/PRO20217Q6UXQ8 127 aa11.56□□□□□ -0.56
SHKBP1-202ENST00000593764 LINC01561Q8N1V8 128 aa11.56□□□□□ -0.56
SHKBP1-202ENST00000593764 A0A1W2PNN7 141 aa11.55□□□□□ -0.56
SHKBP1-202ENST00000593764 NDUFA1O15239 70 aa11.55□□□□□ -0.56
SHKBP1-202ENST00000593764 ERASQ7Z444 233 aa11.55□□□□□ -0.56
SHKBP1-202ENST00000593764 PAPPA-AS1Q5QFB9 102 aa11.54□□□□□ -0.56
SHKBP1-202ENST00000593764 RPL18AQ02543 176 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-202ENST00000593764 SCGB3A1Q96QR1 104 aa11.53□□□□□ -0.56
SHKBP1-202ENST00000593764 C6orf48Q9UBA6 75 aa11.53□□□□□ -0.56
SHKBP1-202ENST00000593764 PRR3P79522 188 aaKnown RBP11.52□□□□□ -0.57
SHKBP1-202ENST00000593764 SVBPQ8N300 66 aa11.52□□□□□ -0.57
SHKBP1-202ENST00000593764 SNAPINO95295 136 aa11.51□□□□□ -0.57
SHKBP1-202ENST00000593764 TLX1NBP0CAT3 122 aa11.51□□□□□ -0.57
SHKBP1-202ENST00000593764 C9orf116Q5BN46 136 aaPredicted RBP11.51□□□□□ -0.57
SHKBP1-202ENST00000593764 C2orf82Q6UX34 121 aa11.51□□□□□ -0.57
SHKBP1-202ENST00000593764 Q6ZRP5 223 aa11.5□□□□□ -0.57
SHKBP1-202ENST00000593764 CDKN2A-AS1Q9UH64 79 aa11.5□□□□□ -0.57
SHKBP1-202ENST00000593764 TRAPPC1Q9Y5R8 145 aa11.5□□□□□ -0.57
SHKBP1-202ENST00000593764 LINC01549A6NIU2 74 aa11.49□□□□□ -0.57
SHKBP1-202ENST00000593764 HERVK_113P63121 156 aa11.49□□□□□ -0.57
SHKBP1-202ENST00000593764 SEC11AP67812 179 aa11.49□□□□□ -0.57
SHKBP1-202ENST00000593764 NDUFA5Q16718 116 aa11.49□□□□□ -0.57
SHKBP1-202ENST00000593764 FA2HQ7L5A8 372 aa11.49□□□□□ -0.57
SHKBP1-202ENST00000593764 URB1-AS1Q96HZ7 61 aa11.48□□□□□ -0.57
SHKBP1-202ENST00000593764 TRBV30A0A0K0K1B3 111 aa11.47□□□□□ -0.57
SHKBP1-202ENST00000593764 C18orf32Q8TCD1 76 aa11.47□□□□□ -0.57
SHKBP1-202ENST00000593764 YPEL4Q96NS1 127 aa11.47□□□□□ -0.57
SHKBP1-202ENST00000593764 GEMIN7Q9H840 131 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-202ENST00000593764 SMCO4Q9NRQ5 59 aa11.47□□□□□ -0.57
SHKBP1-202ENST00000593764 A0A096LNJ9 63 aa11.46□□□□□ -0.57
SHKBP1-202ENST00000593764 CST9LQ9H4G1 147 aa11.46□□□□□ -0.57
SHKBP1-202ENST00000593764 Q8IZM0 81 aa11.45□□□□□ -0.58
SHKBP1-202ENST00000593764 TOMM7Q9P0U1 55 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms