RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 STPG4Q8N801 248 aa10.66□□□□□ -0.7
CLK3-210ENST00000563112 ANAPC16Q96DE5 110 aa10.66□□□□□ -0.7
CLK3-210ENST00000563112 RPS10P5Q9NQ39 176 aa10.66□□□□□ -0.7
CLK3-210ENST00000563112 FAT3Q8TDW7 4589 aa10.66□□□□□ -0.7
CLK3-210ENST00000563112 A0A096LNI7 61 aa10.65□□□□□ -0.7
CLK3-210ENST00000563112 APOMO95445 188 aa10.65□□□□□ -0.7
CLK3-210ENST00000563112 HNRNPA3P51991 378 aaKnown RBP10.65□□□□□ -0.7
CLK3-210ENST00000563112 RPL39P62891 51 aaKnown RBP10.65□□□□□ -0.7
CLK3-210ENST00000563112 PRELID3AQ96N28 172 aa10.65□□□□□ -0.7
CLK3-210ENST00000563112 SPANXA1Q9NS26 97 aa10.65□□□□□ -0.7
CLK3-210ENST00000563112 IGLV4-69A0A075B6H9 119 aa10.63□□□□□ -0.71
CLK3-210ENST00000563112 C5orf38Q86SI9 138 aa10.63□□□□□ -0.71
CLK3-210ENST00000563112 RAB5BP61020 215 aa10.62□□□□□ -0.71
CLK3-210ENST00000563112 MRPS36P82909 103 aaKnown RBP10.62□□□□□ -0.71
CLK3-210ENST00000563112 Q6ZRU5 148 aa10.62□□□□□ -0.71
CLK3-210ENST00000563112 C2orf48Q96LS8 159 aa10.62□□□□□ -0.71
CLK3-210ENST00000563112 CAMK2N2Q96S95 79 aa10.62□□□□□ -0.71
CLK3-210ENST00000563112 LAMTOR2Q9Y2Q5 125 aa10.62□□□□□ -0.71
CLK3-210ENST00000563112 LOC107984640A0A0U1RRK4 108 aa10.61□□□□□ -0.71
CLK3-210ENST00000563112 CTDSP1Q9GZU7 261 aa10.61□□□□□ -0.71
CLK3-210ENST00000563112 IFITM10A6NMD0 228 aa10.6□□□□□ -0.71
CLK3-210ENST00000563112 IFI27P40305 119 aaPredicted RBP10.6□□□□□ -0.71
CLK3-210ENST00000563112 SERTAD4-AS1Q5TG53 156 aa10.6□□□□□ -0.71
CLK3-210ENST00000563112 GAGE2BQ13066 116 aa10.59□□□□□ -0.71
CLK3-210ENST00000563112 OR10D4PQ8NGN7 298 aa10.59□□□□□ -0.71
CLK3-210ENST00000563112 OPRPNQ99935 248 aaPredicted RBP10.59□□□□□ -0.71
CLK3-210ENST00000563112 MAP1LC3AQ9H492 121 aa10.59□□□□□ -0.71
CLK3-210ENST00000563112 LOC389332A0A1B0GUA5 103 aa10.58□□□□□ -0.72
CLK3-210ENST00000563112 PRSS47A8MTI9 375 aa10.58□□□□□ -0.72
CLK3-210ENST00000563112 PTTG1IPP53801 180 aa10.58□□□□□ -0.72
CLK3-210ENST00000563112 SPAG11BQ08648 103 aa10.58□□□□□ -0.72
CLK3-210ENST00000563112 FAM104AQ969W3 186 aa10.58□□□□□ -0.72
CLK3-210ENST00000563112 LOC105371267A0A1B0GV96 52 aa10.57□□□□□ -0.72
CLK3-210ENST00000563112 CBLN2Q8IUK8 224 aa10.57□□□□□ -0.72
CLK3-210ENST00000563112 ORAOV1Q8WV07 137 aa10.57□□□□□ -0.72
CLK3-210ENST00000563112 PYGO1Q9Y3Y4 419 aa10.57□□□□□ -0.72
CLK3-210ENST00000563112 TGIF2-C20orf24A0A0A6YYL0 155 aa10.56□□□□□ -0.72
CLK3-210ENST00000563112 IGHV3OR16-9A0A0B4J2B5 98 aa10.56□□□□□ -0.72
CLK3-210ENST00000563112 S100PP25815 95 aa10.56□□□□□ -0.72
CLK3-210ENST00000563112 Q8N8P6 123 aa10.56□□□□□ -0.72
CLK3-210ENST00000563112 F8WDY8 70 aa10.55□□□□□ -0.72
CLK3-210ENST00000563112 S100A6P06703 90 aa10.55□□□□□ -0.72
CLK3-210ENST00000563112 PRR3P79522 188 aaKnown RBP10.55□□□□□ -0.72
CLK3-210ENST00000563112 RNF151Q2KHN1 245 aa10.55□□□□□ -0.72
CLK3-210ENST00000563112 TMEM141Q96I45 108 aa10.55□□□□□ -0.72
CLK3-210ENST00000563112 IMMP2LQ96T52 175 aa10.54□□□□□ -0.72
CLK3-210ENST00000563112 CYSLTR1Q9Y271 337 aa10.54□□□□□ -0.72
CLK3-210ENST00000563112 IGLV4-3A0A075B6K6 122 aa10.53□□□□□ -0.72
CLK3-210ENST00000563112 COLCA2A8K830 154 aa10.53□□□□□ -0.72
CLK3-210ENST00000563112 NDUFA1O15239 70 aa10.53□□□□□ -0.72
CLK3-210ENST00000563112 RPL18AQ02543 176 aaKnown RBP10.53□□□□□ -0.72
CLK3-210ENST00000563112 ORMDL2Q53FV1 153 aa10.53□□□□□ -0.72
CLK3-210ENST00000563112 TEX43Q6ZNM6 134 aa10.53□□□□□ -0.72
CLK3-210ENST00000563112 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.52□□□□□ -0.73
CLK3-210ENST00000563112 K7EMI3 77 aa10.52□□□□□ -0.73
CLK3-210ENST00000563112 C2orf66Q6UXQ4 117 aa10.52□□□□□ -0.73
CLK3-210ENST00000563112 Q6ZN92 141 aa10.52□□□□□ -0.73
CLK3-210ENST00000563112 C2orf88Q9BSF0 95 aa10.52□□□□□ -0.73
CLK3-210ENST00000563112 MRPL35Q9NZE8 188 aaKnown RBP10.52□□□□□ -0.73
CLK3-210ENST00000563112 A0A0J9YXV3 536 aa10.51□□□□□ -0.73
CLK3-210ENST00000563112 Q6ZRP5 223 aa10.51□□□□□ -0.73
CLK3-210ENST00000563112 NXT2Q9NPJ8 142 aaKnown RBP10.51□□□□□ -0.73
CLK3-210ENST00000563112 A0A087WZ39 114 aa10.5□□□□□ -0.73
CLK3-210ENST00000563112 G0S2P27469 103 aa10.5□□□□□ -0.73
CLK3-210ENST00000563112 LINC00242Q5T6M2 205 aa10.5□□□□□ -0.73
CLK3-210ENST00000563112 VCX2Q9H322 139 aa10.5□□□□□ -0.73
CLK3-210ENST00000563112 TRAV9-1A0A075B6T8 112 aa10.49□□□□□ -0.73
CLK3-210ENST00000563112 C9orf116Q5BN46 136 aaPredicted RBP10.49□□□□□ -0.73
CLK3-210ENST00000563112 A0A1W2PNN7 141 aa10.48□□□□□ -0.73
CLK3-210ENST00000563112 NPSP0C0P6 89 aa10.48□□□□□ -0.73
CLK3-210ENST00000563112 HMCN2Q8NDA2 5059 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 MT1HL1P0DM35 61 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 UBE2D1P51668 147 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 PAPPA-AS1Q5QFB9 102 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 SPINK6Q6UWN8 80 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 UNQ6190/PRO20217Q6UXQ8 127 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 LINC01561Q8N1V8 128 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 PLA2G2DQ9UNK4 145 aa10.47□□□□□ -0.73
CLK3-210ENST00000563112 C10orf25Q5T742 122 aa10.46□□□□□ -0.73
CLK3-210ENST00000563112 AMELXQ99217 191 aa10.46□□□□□ -0.73
CLK3-210ENST00000563112 TLX1NBP0CAT3 122 aa10.45□□□□□ -0.74
CLK3-210ENST00000563112 KIAA1644Q3SXP7 199 aa10.45□□□□□ -0.74
CLK3-210ENST00000563112 REG3GQ6UW15 175 aa10.45□□□□□ -0.74
CLK3-210ENST00000563112 C6orf48Q9UBA6 75 aa10.45□□□□□ -0.74
CLK3-210ENST00000563112 IGIPA6NJ69 53 aa10.44□□□□□ -0.74
CLK3-210ENST00000563112 SEC11AP67812 179 aa10.44□□□□□ -0.74
CLK3-210ENST00000563112 KIAA0087Q14695 138 aa10.44□□□□□ -0.74
CLK3-210ENST00000563112 ZC2HC1BQ5TFG8 222 aa10.44□□□□□ -0.74
CLK3-210ENST00000563112 PACRGQ96M98 296 aaPredicted RBP10.44□□□□□ -0.74
CLK3-210ENST00000563112 TRBV30A0A0K0K1B3 111 aa10.43□□□□□ -0.74
CLK3-210ENST00000563112 MT-ND6P03923 174 aa10.43□□□□□ -0.74
CLK3-210ENST00000563112 PRSS2P07478 247 aa10.43□□□□□ -0.74
CLK3-210ENST00000563112 LINC00173Q6ZV60 143 aa10.43□□□□□ -0.74
CLK3-210ENST00000563112 LINC01600Q96MT4 127 aa10.43□□□□□ -0.74
CLK3-210ENST00000563112 SRSF9Q13242 221 aaKnown RBP eCLIP10.42□□□□□ -0.74
CLK3-210ENST00000563112 COX19Q49B96 90 aa10.42□□□□□ -0.74
CLK3-210ENST00000563112 GAGE2EQ4V326 116 aa10.42□□□□□ -0.74
CLK3-210ENST00000563112 PHF5AQ7RTV0 110 aaKnown RBP10.42□□□□□ -0.74
CLK3-210ENST00000563112 TIMM17AQ99595 171 aa10.42□□□□□ -0.74
CLK3-210ENST00000563112 GNB1LQ9BYB4 327 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms