RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HIST1H2BLQ99880 126 aa6.42□□□□□ -1.38
CUX1-216ENST00000558469 A0A0J9YXV3 536 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 GAGE12HA6NDE8 117 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 PSCAO43653 123 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 LINC00242Q5T6M2 205 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 CDPF1Q6NVV7 123 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 TM2D2Q9BX73 214 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 HYDINQ4G0P3 5121 aa6.41□□□□□ -1.38
CUX1-216ENST00000558469 TRAV12-1A0A0B4J245 112 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 TMEM238LA0A1B0GVL6 79 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 SYS1-DBNDD2H3BUS1 97 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 C3orf79P0CE67 100 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 KRTDAPP60985 99 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 COX6A2Q02221 97 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 KRTAP26-1Q6PEX3 210 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 CD164L2Q6UWJ8 174 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 FAM19A3Q7Z5A8 133 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 CHTOPQ9Y3Y2 248 aaKnown RBP6.4□□□□□ -1.38
CUX1-216ENST00000558469 COX11Q9Y6N1 276 aa6.4□□□□□ -1.38
CUX1-216ENST00000558469 TINCRA0A1B0GVN0 87 aa6.39□□□□□ -1.39
CUX1-216ENST00000558469 SEC11AP67812 179 aa6.39□□□□□ -1.39
CUX1-216ENST00000558469 FOXI1Q12951 378 aa6.39□□□□□ -1.39
CUX1-216ENST00000558469 ODF1Q14990 250 aa6.39□□□□□ -1.39
CUX1-216ENST00000558469 Q6ZRN7 208 aaPredicted RBP6.39□□□□□ -1.39
CUX1-216ENST00000558469 GEMIN7Q9H840 131 aaKnown RBP6.39□□□□□ -1.39
CUX1-216ENST00000558469 IGLV4-69A0A075B6H9 119 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 F8VRH5 84 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 IGLC3P0DOY3 106 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 HERVK_113P63121 156 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 SPATA12Q7Z6I5 190 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 C5orf38Q86SI9 138 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 MAPKAPK5-AS1Q8N8E1 139 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 PMCHL2Q9BQD1 86 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 KRTAP4-8Q9BYQ9 185 aa6.38□□□□□ -1.39
CUX1-216ENST00000558469 MRPL35Q9NZE8 188 aaKnown RBP6.38□□□□□ -1.39
CUX1-216ENST00000558469 FRAS1Q86XX4 4008 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 IGHV3OR16-9A0A0B4J2B5 98 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 C11orf86A6NJI1 115 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 COX7A2LO14548 114 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 RTL8CO15255 209 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 PET117Q6UWS5 81 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 LINC00469Q8N7U9 141 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 OR10D4PQ8NGN7 298 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 CHAC1Q9BUX1 264 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 CDKN2A-AS1Q9UH64 79 aa6.37□□□□□ -1.39
CUX1-216ENST00000558469 KMT2CQ8NEZ4 4911 aaKnown RBP6.36□□□□□ -1.39
CUX1-216ENST00000558469 LECT2O14960 151 aa6.36□□□□□ -1.39
CUX1-216ENST00000558469 MALP21145 153 aa6.36□□□□□ -1.39
CUX1-216ENST00000558469 LINC01545Q5VT33 79 aa6.36□□□□□ -1.39
CUX1-216ENST00000558469 SACSQ9NZJ4 4579 aa6.36□□□□□ -1.39
CUX1-216ENST00000558469 A0A087WZ39 114 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 C20orf202A1L168 122 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 USP17L23D6RBM5 183 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 DPM2O94777 84 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 IGKCP01834 107 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 ZNF22P17026 224 aaPredicted RBP6.35□□□□□ -1.39
CUX1-216ENST00000558469 PLNP26678 52 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 TMEM170BQ5T4T1 132 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 DNAH10Q8IVF4 4471 aa6.35□□□□□ -1.39
CUX1-216ENST00000558469 IGLV5-45A0A087WSX0 123 aa6.34□□□□□ -1.39
CUX1-216ENST00000558469 LRCOL1A6NCL2 159 aa6.34□□□□□ -1.39
CUX1-216ENST00000558469 H3BRM9 83 aa6.34□□□□□ -1.39
CUX1-216ENST00000558469 WFDC2Q14508 124 aa6.34□□□□□ -1.39
CUX1-216ENST00000558469 CFAP161Q6P656 301 aa6.34□□□□□ -1.39
CUX1-216ENST00000558469 IGHV1-58A0A0C4DH39 117 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 APOMO95445 188 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 SCGB1D1O95968 90 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 SPINK8P0C7L1 97 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 LINC01561Q8N1V8 128 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 C15orf56Q8N910 161 aa6.33□□□□□ -1.4
CUX1-216ENST00000558469 DNAH2Q9P225 4427 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 IGHV3-64A0A075B6Q5 118 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 A0A087WTM6 91 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 hDV102S1A0JD36 115 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 SMIM1B2RUZ4 78 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 HIGD2BQ4VC39 106 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 ATOH7Q8N100 152 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 ORAOV1Q8WV07 137 aa6.32□□□□□ -1.4
CUX1-216ENST00000558469 RYR2Q92736 4967 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 TMEM223A0PJW6 202 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 ZNF561-AS1K7EIQ3 104 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 C14orf177Q52M58 125 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 LINC00336Q6ZUF6 198 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 LINC00526Q96FQ7 95 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 TOMM7Q9P0U1 55 aa6.31□□□□□ -1.4
CUX1-216ENST00000558469 GVQW2A0A096LPI5 108 aaPredicted RBP6.3□□□□□ -1.4
CUX1-216ENST00000558469 PRSS2P07478 247 aa6.3□□□□□ -1.4
CUX1-216ENST00000558469 AKR1D1P51857 326 aa6.3□□□□□ -1.4
CUX1-216ENST00000558469 SPAG11BQ08648 103 aa6.3□□□□□ -1.4
CUX1-216ENST00000558469 Q8N814 137 aa6.3□□□□□ -1.4
CUX1-216ENST00000558469 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.29□□□□□ -1.4
CUX1-216ENST00000558469 IGLV5-39A0A0G2JS06 123 aa6.29□□□□□ -1.4
CUX1-216ENST00000558469 HERVK_113P61574 105 aa6.29□□□□□ -1.4
CUX1-216ENST00000558469 C6orf226Q5I0X4 101 aa6.29□□□□□ -1.4
CUX1-216ENST00000558469 STPG4Q8N801 248 aa6.29□□□□□ -1.4
CUX1-216ENST00000558469 COX7B2Q8TF08 81 aa6.29□□□□□ -1.4
CUX1-216ENST00000558469 KIAA0087Q14695 138 aa6.28□□□□□ -1.4
CUX1-216ENST00000558469 JOSD1Q15040 202 aaPredicted RBP6.28□□□□□ -1.4
CUX1-216ENST00000558469 Q8IZM0 81 aa6.28□□□□□ -1.4
CUX1-216ENST00000558469 LOC105371267A0A1B0GV96 52 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms