RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 C11orf52Q96A22 123 aa5.44□□□□□ -1.54
USP28-215ENST00000545608 LRP1Q07954 4544 aaKnown RBP5.44□□□□□ -1.54
USP28-215ENST00000545608 NUPR1O60356 82 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 MGPP08493 103 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 HINT1P49773 126 aaPredicted RBP5.43□□□□□ -1.54
USP28-215ENST00000545608 OCIAD2Q56VL3 154 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 SERTAD4-AS1Q5TG53 156 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 SUMO4Q6EEV6 95 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 MRPL54Q6P161 138 aaKnown RBP5.43□□□□□ -1.54
USP28-215ENST00000545608 SDIM1Q6ZPB5 146 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 FER1L6-AS1Q8NA97 138 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 C20orf203Q8NBC4 194 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 OCC1Q8TAD7 63 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 TPPP3Q9BW30 176 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 TMEM191AQ9H0A3 160 aa5.43□□□□□ -1.54
USP28-215ENST00000545608 IGLV4-60A0A075B6I1 120 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 IGLV10-54A0A075B6I4 117 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 IGHV1-24A0A0C4DH33 117 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 C19orf71A6NCJ1 209 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 C3orf79P0CE67 100 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 REG3AQ06141 175 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 FOXI1Q12951 378 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 CENPWQ5EE01 88 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 GFRA4Q9GZZ7 299 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 CST9LQ9H4G1 147 aa5.42□□□□□ -1.54
USP28-215ENST00000545608 SLPIP03973 132 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 SCGB1A1P11684 91 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 NTF3P20783 257 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 CACNG7P62955 275 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 SEC11AP67812 179 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 SLC25A34Q6PIV7 304 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 TMEM136Q6ZRR5 245 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 ATP5L2Q7Z4Y8 100 aa5.41□□□□□ -1.54
USP28-215ENST00000545608 CHCHD1Q96BP2 118 aaKnown RBP5.41□□□□□ -1.54
USP28-215ENST00000545608 A0A1B0GUV1 79 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 A6NDN8 102 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 H7C1H1 209 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 CNBPP62633 177 aaKnown RBP5.4□□□□□ -1.54
USP28-215ENST00000545608 LYZL1Q6UWQ5 148 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 TSKUQ8WUA8 353 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 TMEM243Q9BU79 118 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 HSPB8Q9UJY1 196 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 V9GYV3 84 aa5.4□□□□□ -1.54
USP28-215ENST00000545608 TRBV20OR9-2A0A075B6H5 130 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 TRAV8-4A0A0B4J246 113 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 SMIM27A0A1W2PRY6 76 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 hDV102S1A0JD36 115 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 F2Z2F3 143 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 J3QR89 54 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 P01737 135 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 CIRBPQ14011 172 aaKnown RBP5.39□□□□□ -1.55
USP28-215ENST00000545608 MTURNQ8N3F0 131 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 MAP1LC3CQ9BXW4 147 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 DPH3P1Q9H4G8 78 aa5.39□□□□□ -1.55
USP28-215ENST00000545608 FAT3Q8TDW7 4589 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 TMEM238C9JI98 176 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 CHTF8P0CG12 524 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 MT1HL1P0DM35 61 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 RNASEKQ6P5S7 137 aaKnown RBP5.38□□□□□ -1.55
USP28-215ENST00000545608 FAM231DQ6ZW35 169 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 OR5A1Q8NGJ0 315 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 PGLYRP4Q96LB8 373 aa5.38□□□□□ -1.55
USP28-215ENST00000545608 IGHV3-64A0A075B6Q5 118 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 A0A087WYN8 130 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 K7EN84 100 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 UBE2L6O14933 153 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 GATD1Q8NB37 220 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 DPH3Q96FX2 82 aa5.37□□□□□ -1.55
USP28-215ENST00000545608 TRAV26-2A0A0B4J265 109 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 IGKV3OR2-268A0A0C4DH90 116 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 A0A1B0GV72 72 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 TAX1BP3O14907 124 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 LEPROTL1O95214 131 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 TWIST1Q15672 202 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 BVES-AS1Q5T3Y7 98 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 AMMECR1LQ6DCA0 310 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 Q6ZRU5 148 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 C15orf56Q8N910 161 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 C18orf32Q8TCD1 76 aa5.36□□□□□ -1.55
USP28-215ENST00000545608 RNASE7Q9H1E1 156 aaKnown RBP5.36□□□□□ -1.55
USP28-215ENST00000545608 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.35□□□□□ -1.55
USP28-215ENST00000545608 H3BRM9 83 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 SYS1-DBNDD2H3BUS1 97 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 FOXA3P55318 350 aaPredicted RBP5.35□□□□□ -1.55
USP28-215ENST00000545608 HIGD2BQ4VC39 106 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 FA2HQ7L5A8 372 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 FAM19A2Q8N3H0 131 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 SPACA4Q8TDM5 124 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 RPL39LQ96EH5 51 aaKnown RBP5.35□□□□□ -1.55
USP28-215ENST00000545608 RNF185Q96GF1 192 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 CNFNQ9BYD5 112 aa5.35□□□□□ -1.55
USP28-215ENST00000545608 RPP21Q9H633 154 aaKnown RBP5.35□□□□□ -1.55
USP28-215ENST00000545608 HMCN2Q8NDA2 5059 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.34□□□□□ -1.55
USP28-215ENST00000545608 A0A1B0GW15 77 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 IGKV2-29A2NJV5 120 aaPredicted RBP5.34□□□□□ -1.55
USP28-215ENST00000545608 FAM231BA6NCW3 169 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 A8MWL6 223 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 HBBP68871 147 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 COX6A2Q02221 97 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms