RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TMEM258P61165 79 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 Q0VG73 95 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 COA6Q5JTJ3 125 aaKnown RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 AMMECR1LQ6DCA0 310 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 MORN3Q6PF18 240 aaPredicted RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 Q6Q795 121 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 SMIM29Q86T20 159 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 CSNK1G2-AS1Q8NCQ2 148 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 COPS9Q8WXC6 57 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 NAA38Q9BRA0 125 aaKnown RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 DPH3P1Q9H4G8 78 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 MRPS16Q9Y3D3 137 aaKnown RBP2.96□□□□□ -1.94
CD44-226ENST00000527889 U3KQK5 164 aa2.96□□□□□ -1.94
CD44-226ENST00000527889 DNAH9Q9NYC9 4486 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 HUWE1Q7Z6Z7 4374 aaKnown RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 IGHV3-73A0A0B4J1V6 119 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 TRAV8-6A0A0B4J262 113 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 LOC107984640A0A0U1RRK4 108 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 A0A1B0GUV1 79 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 CCDC179H3BU77 68 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 K7EQD1 137 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 M0R2P5 195 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 NDUFS5O43920 106 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 APOMO95445 188 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 LINC01547P58512 204 aaPredicted RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 DAZ2Q13117 558 aaKnown RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 PMCHL1Q16048 86 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 DEFB135Q30KP9 77 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 ZNF876PQ49A33 203 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 FAM74A4Q5TZK3 123 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 Q6ZRP5 223 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 DAZ4Q86SG3 579 aaKnown RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 ORMDL3Q8N138 153 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 FAM19A2Q8N3H0 131 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 C10orf126Q8N4M7 172 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 C11orf72Q8NBR9 251 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 RPL39LQ96EH5 51 aaKnown RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 HIST1H2BLQ99880 126 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 LINC00467Q9BRT7 94 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 DAZ3Q9NR90 486 aaKnown RBP2.95□□□□□ -1.94
CD44-226ENST00000527889 KIF25-AS1Q9Y6Z4 181 aa2.95□□□□□ -1.94
CD44-226ENST00000527889 DNAH1Q9P2D7 4330 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 TRGV1A0A0A0MS02 117 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 TRAV4A0A0B4J268 109 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 TMEM262E9PQX1 116 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 K7EP34 96 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 IGHV3-53P01767 116 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 PRB2P02812 416 aaPredicted RBP2.94□□□□□ -1.94
CD44-226ENST00000527889 IFI27P40305 119 aaPredicted RBP2.94□□□□□ -1.94
CD44-226ENST00000527889 LINC00315P59091 139 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 EGFEM1PQ0D2K5 195 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 ZNF56Q15929 161 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 RRN3P1Q2M238 152 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 C9orf153Q5TBE3 101 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 Q6ZTI0 123 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 DEFB104AQ8WTQ1 72 aa2.94□□□□□ -1.94
CD44-226ENST00000527889 TMEM263Q8WUH6 116 aaKnown RBP2.94□□□□□ -1.94
CD44-226ENST00000527889 NOP10Q9NPE3 64 aaKnown RBP2.94□□□□□ -1.94
CD44-226ENST00000527889 C8orf87E5RJ46 101 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 E9PLD3 99 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 DEFB4AO15263 64 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 IGKV2-30P06310 120 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 PRSS1P07477 247 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 P0DMU3 169 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 FAM231AP0DMU4 169 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 FAM231CP0DMU5 169 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 FAM222AQ5U5X8 452 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 CFAP126Q5VTH2 177 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 LINC00173Q6ZV60 143 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 POM121L12Q8N7R1 296 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 BRK1Q8WUW1 75 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 CHCHD1Q96BP2 118 aaKnown RBP2.93□□□□□ -1.94
CD44-226ENST00000527889 C16orf74Q96GX8 76 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 IMUPQ9GZP8 106 aa2.93□□□□□ -1.94
CD44-226ENST00000527889 IGLV2-18A0A075B6J9 118 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 A0A096LNJ9 63 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 IGHV1-24A0A0C4DH33 117 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 IGHV3-38A0A0C4DH36 116 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 LOC100131303A0A0U1RQF7 123 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 FAM236AA0A1B0GUQ0 79 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 FAM236BA0A1B0GV22 79 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 A8MWV9 139 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 M0QY20 66 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 SNCGO76070 127 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 KRTDAPP60985 99 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 HERVK_113P63121 156 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 LINC00242Q5T6M2 205 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 Q5XG85 94 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 UFSP1Q6NVU6 142 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 TEX43Q6ZNM6 134 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 Q6ZRU5 148 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 Q6ZUT4 128 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 Q8N8P6 123 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 SMIM2Q9BVW6 85 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 ST20Q9HBF5 79 aa2.92□□□□□ -1.94
CD44-226ENST00000527889 MUC2Q02817 5179 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 DNAH7Q8WXX0 4024 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 TRGV2A0A075B6R0 118 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 TRAV8-3A0A0A6YYJ7 113 aa2.91□□□□□ -1.94
CD44-226ENST00000527889 TEX48A0A1B0GUV7 120 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms