RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 COX6A2Q02221 97 aa10.79□□□□□ -0.68
LSM1-204ENST00000522515 RYR3Q15413 4870 aa10.79□□□□□ -0.68
LSM1-204ENST00000522515 LOC105371267A0A1B0GV96 52 aa10.78□□□□□ -0.68
LSM1-204ENST00000522515 IGHV3OR16-9A0A0B4J2B5 98 aa10.77□□□□□ -0.68
LSM1-204ENST00000522515 CHTOPQ9Y3Y2 248 aaKnown RBP10.77□□□□□ -0.68
LSM1-204ENST00000522515 IGLV4-69A0A075B6H9 119 aa10.77□□□□□ -0.69
LSM1-204ENST00000522515 TINCRA0A1B0GVN0 87 aa10.77□□□□□ -0.69
LSM1-204ENST00000522515 SYS1-DBNDD2H3BUS1 97 aa10.77□□□□□ -0.69
LSM1-204ENST00000522515 C3orf79P0CE67 100 aa10.77□□□□□ -0.69
LSM1-204ENST00000522515 ODF1Q14990 250 aa10.77□□□□□ -0.69
LSM1-204ENST00000522515 IGLC3P0DOY3 106 aa10.76□□□□□ -0.69
LSM1-204ENST00000522515 SEC11AP67812 179 aa10.76□□□□□ -0.69
LSM1-204ENST00000522515 C5orf38Q86SI9 138 aa10.76□□□□□ -0.69
LSM1-204ENST00000522515 MRPL35Q9NZE8 188 aaKnown RBP10.76□□□□□ -0.69
LSM1-204ENST00000522515 LECT2O14960 151 aa10.75□□□□□ -0.69
LSM1-204ENST00000522515 KRTDAPP60985 99 aa10.75□□□□□ -0.69
LSM1-204ENST00000522515 HERVK_113P63121 156 aa10.75□□□□□ -0.69
LSM1-204ENST00000522515 SPATA12Q7Z6I5 190 aa10.75□□□□□ -0.69
LSM1-204ENST00000522515 CHAC1Q9BUX1 264 aa10.75□□□□□ -0.69
LSM1-204ENST00000522515 GEMIN7Q9H840 131 aaKnown RBP10.75□□□□□ -0.69
LSM1-204ENST00000522515 DNAH17Q9UFH2 4485 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 F8VRH5 84 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 COX7A2LO14548 114 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 TNP2Q05952 138 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 WFDC2Q14508 124 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 PMCHL2Q9BQD1 86 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 CDKN2A-AS1Q9UH64 79 aa10.74□□□□□ -0.69
LSM1-204ENST00000522515 LRCOL1A6NCL2 159 aa10.73□□□□□ -0.69
LSM1-204ENST00000522515 C11orf86A6NJI1 115 aa10.73□□□□□ -0.69
LSM1-204ENST00000522515 PET117Q6UWS5 81 aa10.73□□□□□ -0.69
LSM1-204ENST00000522515 LINC00469Q8N7U9 141 aa10.73□□□□□ -0.69
LSM1-204ENST00000522515 FRAS1Q86XX4 4008 aa10.72□□□□□ -0.69
LSM1-204ENST00000522515 IGLV5-45A0A087WSX0 123 aa10.72□□□□□ -0.69
LSM1-204ENST00000522515 A0A087WZ39 114 aa10.72□□□□□ -0.69
LSM1-204ENST00000522515 USP17L23D6RBM5 183 aa10.72□□□□□ -0.69
LSM1-204ENST00000522515 A0A087WTM6 91 aa10.71□□□□□ -0.69
LSM1-204ENST00000522515 ZNF22P17026 224 aaPredicted RBP10.71□□□□□ -0.69
LSM1-204ENST00000522515 MALP21145 153 aa10.71□□□□□ -0.69
LSM1-204ENST00000522515 LINC01545Q5VT33 79 aa10.71□□□□□ -0.69
LSM1-204ENST00000522515 C15orf56Q8N910 161 aa10.71□□□□□ -0.69
LSM1-204ENST00000522515 LINC00336Q6ZUF6 198 aa10.69□□□□□ -0.7
LSM1-204ENST00000522515 OR10D4PQ8NGN7 298 aa10.69□□□□□ -0.7
LSM1-204ENST00000522515 FAT2Q9NYQ8 4349 aa10.69□□□□□ -0.7
LSM1-204ENST00000522515 DPM2O94777 84 aa10.69□□□□□ -0.7
LSM1-204ENST00000522515 TMEM170BQ5T4T1 132 aa10.69□□□□□ -0.7
LSM1-204ENST00000522515 IGHV1-58A0A0C4DH39 117 aa10.68□□□□□ -0.7
LSM1-204ENST00000522515 PLNP26678 52 aa10.68□□□□□ -0.7
LSM1-204ENST00000522515 CFAP161Q6P656 301 aa10.68□□□□□ -0.7
LSM1-204ENST00000522515 LINC01561Q8N1V8 128 aa10.68□□□□□ -0.7
LSM1-204ENST00000522515 IGHV3-64A0A075B6Q5 118 aa10.67□□□□□ -0.7
LSM1-204ENST00000522515 APOMO95445 188 aa10.67□□□□□ -0.7
LSM1-204ENST00000522515 IGKCP01834 107 aa10.67□□□□□ -0.7
LSM1-204ENST00000522515 SPINK8P0C7L1 97 aa10.67□□□□□ -0.7
LSM1-204ENST00000522515 HIGD2BQ4VC39 106 aa10.67□□□□□ -0.7
LSM1-204ENST00000522515 SMIM1B2RUZ4 78 aa10.66□□□□□ -0.7
LSM1-204ENST00000522515 H3BRM9 83 aa10.66□□□□□ -0.7
LSM1-204ENST00000522515 Q8N814 137 aa10.66□□□□□ -0.7
LSM1-204ENST00000522515 ORAOV1Q8WV07 137 aa10.66□□□□□ -0.7
LSM1-204ENST00000522515 GVQW2A0A096LPI5 108 aaPredicted RBP10.65□□□□□ -0.7
LSM1-204ENST00000522515 LINC00526Q96FQ7 95 aa10.65□□□□□ -0.7
LSM1-204ENST00000522515 hDV102S1A0JD36 115 aa10.65□□□□□ -0.71
LSM1-204ENST00000522515 C20orf202A1L168 122 aa10.65□□□□□ -0.71
LSM1-204ENST00000522515 C14orf177Q52M58 125 aa10.65□□□□□ -0.71
LSM1-204ENST00000522515 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.64□□□□□ -0.71
LSM1-204ENST00000522515 TMEM223A0PJW6 202 aa10.64□□□□□ -0.71
LSM1-204ENST00000522515 EREGO14944 169 aa10.64□□□□□ -0.71
LSM1-204ENST00000522515 ZNF561-AS1K7EIQ3 104 aa10.63□□□□□ -0.71
LSM1-204ENST00000522515 SPAG11BQ08648 103 aa10.63□□□□□ -0.71
LSM1-204ENST00000522515 KIAA0087Q14695 138 aa10.63□□□□□ -0.71
LSM1-204ENST00000522515 IGLV5-39A0A0G2JS06 123 aa10.62□□□□□ -0.71
LSM1-204ENST00000522515 ATOH7Q8N100 152 aa10.62□□□□□ -0.71
LSM1-204ENST00000522515 TOMM7Q9P0U1 55 aa10.62□□□□□ -0.71
LSM1-204ENST00000522515 SLPIP03973 132 aa10.61□□□□□ -0.71
LSM1-204ENST00000522515 FUSP35637 526 aaKnown RBP eCLIP10.61□□□□□ -0.71
LSM1-204ENST00000522515 SCGB1D1O95968 90 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 KRTAP10-2P60368 255 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 PKD1P98161 4303 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 DNAH11Q96DT5 4516 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 A0A1B0GVY2 172 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 Q8IZM0 81 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 COX7B2Q8TF08 81 aa10.6□□□□□ -0.71
LSM1-204ENST00000522515 NTN5Q8WTR8 489 aaPredicted RBP10.6□□□□□ -0.71
LSM1-204ENST00000522515 PRSS2P07478 247 aa10.59□□□□□ -0.71
LSM1-204ENST00000522515 AKR1D1P51857 326 aa10.59□□□□□ -0.71
LSM1-204ENST00000522515 C6orf226Q5I0X4 101 aa10.59□□□□□ -0.71
LSM1-204ENST00000522515 STPG4Q8N801 248 aa10.59□□□□□ -0.71
LSM1-204ENST00000522515 C2orf82Q6UX34 121 aa10.58□□□□□ -0.72
LSM1-204ENST00000522515 C2orf48Q96LS8 159 aa10.58□□□□□ -0.72
LSM1-204ENST00000522515 HERVK_113P61574 105 aa10.57□□□□□ -0.72
LSM1-204ENST00000522515 CNBPP62633 177 aaKnown RBP10.57□□□□□ -0.72
LSM1-204ENST00000522515 CAMK2N2Q96S95 79 aa10.57□□□□□ -0.72
LSM1-204ENST00000522515 JOSD1Q15040 202 aaPredicted RBP10.56□□□□□ -0.72
LSM1-204ENST00000522515 SYCNQ0VAF6 134 aa10.56□□□□□ -0.72
LSM1-204ENST00000522515 C10orf25Q5T742 122 aa10.56□□□□□ -0.72
LSM1-204ENST00000522515 UNQ6190/PRO20217Q6UXQ8 127 aa10.56□□□□□ -0.72
LSM1-204ENST00000522515 Q6ZRU5 148 aa10.56□□□□□ -0.72
LSM1-204ENST00000522515 IGLV5-52A0A0A0MRZ9 124 aa10.55□□□□□ -0.72
LSM1-204ENST00000522515 E9PLD3 99 aa10.55□□□□□ -0.72
LSM1-204ENST00000522515 LEPROTO15243 131 aa10.55□□□□□ -0.72
LSM1-204ENST00000522515 CKS1BP61024 79 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 1442.4 ms