RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 HIST1H2BLQ99880 126 aa13.91□□□□□ -0.18
LSM6-207ENST00000515311 TMA7Q9Y2S6 64 aaKnown RBP13.91□□□□□ -0.18
LSM6-207ENST00000515311 A0A0J9YXV3 536 aa13.9□□□□□ -0.18
LSM6-207ENST00000515311 TINCRA0A1B0GVN0 87 aa13.9□□□□□ -0.18
LSM6-207ENST00000515311 HERVK_113P63121 156 aa13.9□□□□□ -0.18
LSM6-207ENST00000515311 IGLC3P0DOY3 106 aa13.89□□□□□ -0.19
LSM6-207ENST00000515311 COX6A2Q02221 97 aa13.89□□□□□ -0.19
LSM6-207ENST00000515311 LINC00336Q6ZUF6 198 aa13.89□□□□□ -0.19
LSM6-207ENST00000515311 SPATA12Q7Z6I5 190 aa13.89□□□□□ -0.19
LSM6-207ENST00000515311 GEMIN7Q9H840 131 aaKnown RBP13.89□□□□□ -0.19
LSM6-207ENST00000515311 CHTOPQ9Y3Y2 248 aaKnown RBP13.89□□□□□ -0.19
LSM6-207ENST00000515311 IGLV4-69A0A075B6H9 119 aa13.88□□□□□ -0.19
LSM6-207ENST00000515311 COX7A2LO14548 114 aa13.88□□□□□ -0.19
LSM6-207ENST00000515311 ODF1Q14990 250 aa13.88□□□□□ -0.19
LSM6-207ENST00000515311 DNAH10Q8IVF4 4471 aa13.87□□□□□ -0.19
LSM6-207ENST00000515311 LRCOL1A6NCL2 159 aa13.87□□□□□ -0.19
LSM6-207ENST00000515311 F8VRH5 84 aa13.87□□□□□ -0.19
LSM6-207ENST00000515311 H0Y8G0 127 aa13.87□□□□□ -0.19
LSM6-207ENST00000515311 SYS1-DBNDD2H3BUS1 97 aa13.87□□□□□ -0.19
LSM6-207ENST00000515311 IGLV5-45A0A087WSX0 123 aa13.86□□□□□ -0.19
LSM6-207ENST00000515311 CHAC1Q9BUX1 264 aa13.86□□□□□ -0.19
LSM6-207ENST00000515311 MRPL35Q9NZE8 188 aaKnown RBP13.86□□□□□ -0.19
LSM6-207ENST00000515311 RYR3Q15413 4870 aa13.86□□□□□ -0.19
LSM6-207ENST00000515311 A0A087WZ39 114 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 C3orf79P0CE67 100 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 TNP2Q05952 138 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 PET117Q6UWS5 81 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 C5orf38Q86SI9 138 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 LINC01561Q8N1V8 128 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 FRAS1Q86XX4 4008 aa13.85□□□□□ -0.19
LSM6-207ENST00000515311 A0A087WTM6 91 aa13.84□□□□□ -0.19
LSM6-207ENST00000515311 USP17L23D6RBM5 183 aa13.84□□□□□ -0.19
LSM6-207ENST00000515311 KRTDAPP60985 99 aa13.84□□□□□ -0.19
LSM6-207ENST00000515311 CFAP161Q6P656 301 aa13.84□□□□□ -0.19
LSM6-207ENST00000515311 CDKN2A-AS1Q9UH64 79 aa13.84□□□□□ -0.19
LSM6-207ENST00000515311 MALP21145 153 aa13.83□□□□□ -0.2
LSM6-207ENST00000515311 LINC00469Q8N7U9 141 aa13.83□□□□□ -0.2
LSM6-207ENST00000515311 DNAH17Q9UFH2 4485 aa13.83□□□□□ -0.2
LSM6-207ENST00000515311 IGHV1-58A0A0C4DH39 117 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 C11orf86A6NJI1 115 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 LECT2O14960 151 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 PLNP26678 52 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 WFDC2Q14508 124 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 C14orf177Q52M58 125 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 C15orf56Q8N910 161 aa13.82□□□□□ -0.2
LSM6-207ENST00000515311 APOMO95445 188 aa13.81□□□□□ -0.2
LSM6-207ENST00000515311 LINC01545Q5VT33 79 aa13.81□□□□□ -0.2
LSM6-207ENST00000515311 H3BRM9 83 aa13.8□□□□□ -0.2
LSM6-207ENST00000515311 EREGO14944 169 aa13.8□□□□□ -0.2
LSM6-207ENST00000515311 DPM2O94777 84 aa13.8□□□□□ -0.2
LSM6-207ENST00000515311 IGHV3-64A0A075B6Q5 118 aa13.79□□□□□ -0.2
LSM6-207ENST00000515311 GVQW2A0A096LPI5 108 aaPredicted RBP13.79□□□□□ -0.2
LSM6-207ENST00000515311 ZNF22P17026 224 aaPredicted RBP13.79□□□□□ -0.2
LSM6-207ENST00000515311 Q8N814 137 aa13.78□□□□□ -0.2
LSM6-207ENST00000515311 OR10D4PQ8NGN7 298 aa13.78□□□□□ -0.2
LSM6-207ENST00000515311 C20orf202A1L168 122 aa13.77□□□□□ -0.21
LSM6-207ENST00000515311 TMEM170BQ5T4T1 132 aa13.77□□□□□ -0.21
LSM6-207ENST00000515311 PMCHL2Q9BQD1 86 aa13.77□□□□□ -0.21
LSM6-207ENST00000515311 FAT2Q9NYQ8 4349 aa13.76□□□□□ -0.21
LSM6-207ENST00000515311 SMIM1B2RUZ4 78 aa13.76□□□□□ -0.21
LSM6-207ENST00000515311 IGKCP01834 107 aa13.76□□□□□ -0.21
LSM6-207ENST00000515311 ORAOV1Q8WV07 137 aa13.76□□□□□ -0.21
LSM6-207ENST00000515311 hDV102S1A0JD36 115 aa13.75□□□□□ -0.21
LSM6-207ENST00000515311 AKR1D1P51857 326 aa13.74□□□□□ -0.21
LSM6-207ENST00000515311 HIGD2BQ4VC39 106 aa13.74□□□□□ -0.21
LSM6-207ENST00000515311 ZNF561-AS1K7EIQ3 104 aa13.73□□□□□ -0.21
LSM6-207ENST00000515311 SPINK8P0C7L1 97 aa13.73□□□□□ -0.21
LSM6-207ENST00000515311 SPAG11BQ08648 103 aa13.73□□□□□ -0.21
LSM6-207ENST00000515311 IGLV5-39A0A0G2JS06 123 aa13.72□□□□□ -0.21
LSM6-207ENST00000515311 TMEM223A0PJW6 202 aa13.72□□□□□ -0.21
LSM6-207ENST00000515311 NTN5Q8WTR8 489 aaPredicted RBP13.72□□□□□ -0.21
LSM6-207ENST00000515311 A0A1B0GVY2 172 aa13.7□□□□□ -0.22
LSM6-207ENST00000515311 F8WDY8 70 aa13.7□□□□□ -0.22
LSM6-207ENST00000515311 KIAA0087Q14695 138 aa13.7□□□□□ -0.22
LSM6-207ENST00000515311 Q8IZM0 81 aa13.7□□□□□ -0.22
LSM6-207ENST00000515311 C2orf48Q96LS8 159 aa13.7□□□□□ -0.22
LSM6-207ENST00000515311 CNBPP62633 177 aaKnown RBP13.69□□□□□ -0.22
LSM6-207ENST00000515311 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.68□□□□□ -0.22
LSM6-207ENST00000515311 PRSS2P07478 247 aa13.68□□□□□ -0.22
LSM6-207ENST00000515311 PKD1P98161 4303 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 HERVK_113P61574 105 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 CDPF1Q6NVV7 123 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 COX7B2Q8TF08 81 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 LINC00526Q96FQ7 95 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 PGPEP1Q9NXJ5 209 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 TOMM7Q9P0U1 55 aa13.67□□□□□ -0.22
LSM6-207ENST00000515311 SLPIP03973 132 aa13.66□□□□□ -0.22
LSM6-207ENST00000515311 KRTAP10-2P60368 255 aa13.66□□□□□ -0.22
LSM6-207ENST00000515311 C6orf226Q5I0X4 101 aa13.66□□□□□ -0.22
LSM6-207ENST00000515311 CAMK2N2Q96S95 79 aa13.65□□□□□ -0.22
LSM6-207ENST00000515311 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.64□□□□□ -0.23
LSM6-207ENST00000515311 SCGB1D1O95968 90 aa13.64□□□□□ -0.23
LSM6-207ENST00000515311 CXCL5P42830 114 aa13.64□□□□□ -0.23
LSM6-207ENST00000515311 SYCNQ0VAF6 134 aa13.64□□□□□ -0.23
LSM6-207ENST00000515311 IGLV5-52A0A0A0MRZ9 124 aa13.63□□□□□ -0.23
LSM6-207ENST00000515311 NDUFA1O15239 70 aa13.63□□□□□ -0.23
LSM6-207ENST00000515311 CKS1BP61024 79 aa13.63□□□□□ -0.23
LSM6-207ENST00000515311 DNAH11Q96DT5 4516 aa13.62□□□□□ -0.23
LSM6-207ENST00000515311 ATOH7Q8N100 152 aa13.62□□□□□ -0.23
LSM6-207ENST00000515311 CARD19Q96LW7 228 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms