RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-204	ENST00000474025	C2orf48	Q96LS8	159 aa		3.06	□□□□□ -1.92
SNRNP40-204	ENST00000474025	CAMK2N2	Q96S95	79 aa		3.06	□□□□□ -1.92
SNRNP40-204	ENST00000474025	OPRPN	Q99935	248 aa	Predicted RBP	3.06	□□□□□ -1.92
SNRNP40-204	ENST00000474025	CDC42SE2	Q9NRR3	84 aa		3.06	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TRAV1-1	A0A0B4J248	108 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TRBV6-5	A0A0K0K1A5	114 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	FAM168B	A1KXE4	195 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	RAB19	A4D1S5	217 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	C1orf196	B1AJZ1	125 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025		I3L3M4	83 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	ARPC5	O15511	151 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	GNG4	P50150	75 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	UBE2D1	P51668	147 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	FOXA3	P55318	350 aa	Predicted RBP	3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	CCL20	P78556	96 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TEX261	Q6UWH6	196 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TSKU	Q8WUA8	353 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	ALKBH7	Q9BT30	221 aa	Predicted RBP	3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	MANBAL	Q9NQG1	85 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TMEM242	Q9NWH2	141 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	GNG13	Q9P2W3	67 aa		3.05	□□□□□ -1.92
SNRNP40-204	ENST00000474025	C7orf77	A4D0Y5	90 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	PMCH	P20382	165 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	BLOC1S1	P78537	153 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	SPAG11B	Q08648	103 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	LBH	Q53QV2	105 aa	Predicted RBP	3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	C5orf38	Q86SI9	138 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	KRTAP7-1	Q8IUC3	87 aa		3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	RNASE7	Q9H1E1	156 aa	Known RBP	3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	RPP21	Q9H633	154 aa	Known RBP	3.04	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TRAV13-1	A0A0B4J241	112 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TRBV27	A0A0K0K1C4	114 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	SMLR1	H3BR10	107 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025		K7EN84	100 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TSPAN13	O95857	204 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	TLX1NB	P0CAT3	122 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	POLR2K	P53803	58 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	ZNF345	Q14585	488 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	RNASE13	Q5GAN3	156 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	SMIM15	Q7Z3B0	74 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	OR10D4P	Q8NGN7	298 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	IMMP2L	Q96T52	175 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	ST20	Q9HBF5	79 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	BIN3	Q9NQY0	253 aa		3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	MRPL35	Q9NZE8	188 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	CARHSP1	Q9Y2V2	147 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025	CSDC2	Q9Y534	153 aa	Known RBP	3.03	□□□□□ -1.92
SNRNP40-204	ENST00000474025		A0A0U1RRA0	63 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025		M0QXV9	152 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	PDE6D	O43924	150 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	LINC01547	P58512	204 aa	Predicted RBP	3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	RGS21	Q2M5E4	152 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	C10orf25	Q5T742	122 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025		Q6ZUT4	128 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	SMDT1	Q9H4I9	107 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	MED9	Q9NWA0	146 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025	UBE2D4	Q9Y2X8	147 aa		3.02	□□□□□ -1.93
SNRNP40-204	ENST00000474025		A0A087X002	238 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	IGHV3OR16-9	A0A0B4J2B5	98 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	VCY	O14598	125 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	NDUFA1	O15239	70 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	ZNF861P	O60384	105 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	SNRPE	P62304	92 aa	Known RBP	3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	UBE2B	P63146	152 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	GAGE2E	Q4V326	116 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	UNQ6190/PRO20217	Q6UXQ8	127 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	ERAS	Q7Z444	233 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	ORAOV1	Q8WV07	137 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	GEMIN7	Q9H840	131 aa	Known RBP	3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	C6orf48	Q9UBA6	75 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	GAGE2D	Q9UEU5	116 aa		3.01	□□□□□ -1.93
SNRNP40-204	ENST00000474025	KANTR	A0A1W2PQU2	76 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	HMSD	A8MTL9	139 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	FCER1G	P30273	86 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	SMAGP	Q0VAQ4	97 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TPRXL	Q17RH7	258 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TMEM241	Q24JQ0	296 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	C9orf129	Q5T035	196 aa	Known RBP	3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	FAM104A	Q969W3	186 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TIMM21	Q9BVV7	248 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TMEM191A	Q9H0A3	160 aa		3	□□□□□ -1.93
SNRNP40-204	ENST00000474025		A8MWL6	223 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	NDUFC2-KCTD14	E9PQ53	114 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	SMKR1	H3BMG3	65 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TEX46	H3BTG2	121 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	GATC	O43716	136 aa	Known RBP	2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	RAB4A	P20338	218 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	SEC61G	P60059	68 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	KIAA0087	Q14695	138 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	AMN1	Q8IY45	258 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	NRAC	Q8N912	160 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TYMSOS	Q8TAI1	123 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	KIR2DL4	Q99706	377 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	RETNLB	Q9BQ08	111 aa		2.99	□□□□□ -1.93
SNRNP40-204	ENST00000474025	TRBV30	A0A0K0K1B3	111 aa		2.98	□□□□□ -1.93
SNRNP40-204	ENST00000474025		A0A1B0GUT8	65 aa		2.98	□□□□□ -1.93
SNRNP40-204	ENST00000474025	HIGD1C	A8MV81	97 aa		2.98	□□□□□ -1.93
SNRNP40-204	ENST00000474025	NUPR1	O60356	82 aa		2.98	□□□□□ -1.93
SNRNP40-204	ENST00000474025	CRYGA	P11844	174 aa		2.98	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 100 ms