RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 VCX2Q9H322 139 aa9.89□□□□□ -0.83
SDC3-203ENST00000471567 IGHV3OR16-9A0A0B4J2B5 98 aa9.88□□□□□ -0.83
SDC3-203ENST00000471567 APOMO95445 188 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 LINC00614P0C842 121 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 UBE2D1P51668 147 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 RAB5BP61020 215 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 LINC00173Q6ZV60 143 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 C5orf38Q86SI9 138 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 SCGB3A1Q96QR1 104 aa9.87□□□□□ -0.83
SDC3-203ENST00000471567 IGHV3-64A0A075B6Q5 118 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 ZNF561-AS1K7EIQ3 104 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 LINC00242Q5T6M2 205 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 SDIM1Q6ZPB5 146 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 Q8N1X5 172 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 HSPG2P98160 4391 aa9.86□□□□□ -0.83
SDC3-203ENST00000471567 COLCA2A8K830 154 aa9.85□□□□□ -0.83
SDC3-203ENST00000471567 FAM19A3Q7Z5A8 133 aa9.85□□□□□ -0.83
SDC3-203ENST00000471567 URB1-AS1Q96HZ7 61 aa9.85□□□□□ -0.83
SDC3-203ENST00000471567 ZC2HC1BQ5TFG8 222 aa9.84□□□□□ -0.83
SDC3-203ENST00000471567 A0A087WZ39 114 aa9.83□□□□□ -0.84
SDC3-203ENST00000471567 SEC11AP67812 179 aa9.83□□□□□ -0.84
SDC3-203ENST00000471567 LINC01561Q8N1V8 128 aa9.83□□□□□ -0.84
SDC3-203ENST00000471567 OR10D4PQ8NGN7 298 aa9.83□□□□□ -0.84
SDC3-203ENST00000471567 CHAC1Q9BUX1 264 aa9.83□□□□□ -0.84
SDC3-203ENST00000471567 DNAH8Q96JB1 4490 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 IGLV4-69A0A075B6H9 119 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 COX6A2Q02221 97 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 SYCNQ0VAF6 134 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 LINC00526Q96FQ7 95 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 C2orf48Q96LS8 159 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 KRTAP17-1Q9BYP8 105 aa9.82□□□□□ -0.84
SDC3-203ENST00000471567 A0A096LNJ9 63 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 F8WDY8 70 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.81□□□□□ -0.84
SDC3-203ENST00000471567 HBDP02042 147 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 TRGC2P03986 189 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 HAMPP81172 84 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 SPAG11BQ08648 103 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 CHCHD1Q96BP2 118 aaKnown RBP9.81□□□□□ -0.84
SDC3-203ENST00000471567 CARD19Q96LW7 228 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 PKIGQ9Y2B9 76 aa9.81□□□□□ -0.84
SDC3-203ENST00000471567 HERVK_113P63121 156 aa9.8□□□□□ -0.84
SDC3-203ENST00000471567 SCXQ7RTU7 201 aa9.8□□□□□ -0.84
SDC3-203ENST00000471567 ORAOV1Q8WV07 137 aa9.8□□□□□ -0.84
SDC3-203ENST00000471567 CIRBPQ14011 172 aaKnown RBP9.79□□□□□ -0.84
SDC3-203ENST00000471567 PMVKQ15126 192 aa9.79□□□□□ -0.84
SDC3-203ENST00000471567 CIRBP-AS1Q8TBR5 109 aa9.79□□□□□ -0.84
SDC3-203ENST00000471567 CAMK2N2Q96S95 79 aa9.79□□□□□ -0.84
SDC3-203ENST00000471567 CST9LQ9H4G1 147 aa9.79□□□□□ -0.84
SDC3-203ENST00000471567 SMR3BP02814 79 aaPredicted RBP9.78□□□□□ -0.84
SDC3-203ENST00000471567 PDZD11Q5EBL8 140 aa9.78□□□□□ -0.84
SDC3-203ENST00000471567 GEMIN7Q9H840 131 aaKnown RBP9.78□□□□□ -0.84
SDC3-203ENST00000471567 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.78□□□□□ -0.84
SDC3-203ENST00000471567 A0A0J9YXV3 536 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 TINCRA0A1B0GVN0 87 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 EPM2AB3EWF7 344 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 ATP5LO75964 103 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 PMCHL1Q16048 86 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 Q6ZRU5 148 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 BAGE3Q86Y29 109 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 KRTAP4-5Q9BYR2 181 aa9.77□□□□□ -0.85
SDC3-203ENST00000471567 FAM229AH3BQW9 127 aa9.76□□□□□ -0.85
SDC3-203ENST00000471567 PANO1I0J062 215 aa9.76□□□□□ -0.85
SDC3-203ENST00000471567 RNF151Q2KHN1 245 aa9.76□□□□□ -0.85
SDC3-203ENST00000471567 KIAA0087Q14695 138 aa9.75□□□□□ -0.85
SDC3-203ENST00000471567 Q5VSD8 79 aa9.75□□□□□ -0.85
SDC3-203ENST00000471567 SPACA4Q8TDM5 124 aa9.75□□□□□ -0.85
SDC3-203ENST00000471567 MRPL35Q9NZE8 188 aaKnown RBP9.75□□□□□ -0.85
SDC3-203ENST00000471567 CDKN2A-AS1Q9UH64 79 aa9.75□□□□□ -0.85
SDC3-203ENST00000471567 IGLV5-45A0A087WSX0 123 aa9.74□□□□□ -0.85
SDC3-203ENST00000471567 NDUFA1O15239 70 aa9.74□□□□□ -0.85
SDC3-203ENST00000471567 HSBP1O75506 76 aa9.74□□□□□ -0.85
SDC3-203ENST00000471567 DPH3Q96FX2 82 aa9.74□□□□□ -0.85
SDC3-203ENST00000471567 LINC00474Q9P2X8 69 aa9.74□□□□□ -0.85
SDC3-203ENST00000471567 LOC107984640A0A0U1RRK4 108 aa9.73□□□□□ -0.85
SDC3-203ENST00000471567 CHTF8P0CG12 524 aa9.73□□□□□ -0.85
SDC3-203ENST00000471567 LINC00469Q8N7U9 141 aa9.73□□□□□ -0.85
SDC3-203ENST00000471567 PACRGQ96M98 296 aaPredicted RBP9.73□□□□□ -0.85
SDC3-203ENST00000471567 A0A096LNI7 61 aa9.72□□□□□ -0.85
SDC3-203ENST00000471567 PRSS2P07478 247 aa9.72□□□□□ -0.85
SDC3-203ENST00000471567 NDUFA6P56556 154 aa9.72□□□□□ -0.85
SDC3-203ENST00000471567 Q8IZM0 81 aa9.72□□□□□ -0.85
SDC3-203ENST00000471567 LINC00528Q8N1L1 170 aa9.72□□□□□ -0.85
SDC3-203ENST00000471567 A0A087WYN8 130 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 IGKV2-24A0A0C4DH68 120 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 IGLC3P0DOY3 106 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 MAJINQ3KP22 176 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 UNQ6190/PRO20217Q6UXQ8 127 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 PLAC8Q9NZF1 115 aa9.71□□□□□ -0.86
SDC3-203ENST00000471567 TRBV30A0A0K0K1B3 111 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 SERF1AO75920 110 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 PLA2G1BP04054 148 aaKnown RBP9.7□□□□□ -0.86
SDC3-203ENST00000471567 PTTG1IPP53801 180 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 C6orf226Q5I0X4 101 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 C10orf25Q5T742 122 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 IFI27L1Q96BM0 104 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 TOMM7Q9P0U1 55 aa9.7□□□□□ -0.86
SDC3-203ENST00000471567 SMIM1B2RUZ4 78 aa9.69□□□□□ -0.86
SDC3-203ENST00000471567 H3BRM9 83 aa9.69□□□□□ -0.86
SDC3-203ENST00000471567 FAM19A2Q8N3H0 131 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 180.1 ms