RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 CFAP161Q6P656 301 aa6.92□□□□□ -1.3
HDAC3-205ENST00000469550 SDIM1Q6ZPB5 146 aa6.92□□□□□ -1.3
HDAC3-205ENST00000469550 WFDC9Q8NEX5 89 aa6.92□□□□□ -1.3
HDAC3-205ENST00000469550 PPDPFQ9H3Y8 114 aa6.92□□□□□ -1.3
HDAC3-205ENST00000469550 COX7A2LO14548 114 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 ATP5G1P05496 136 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 BLCAPP62952 87 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 OXLD1Q5BKU9 147 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 HIST2H2BDQ6DRA6 164 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 LINC00643Q86TS7 51 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 MRAPQ8TCY5 172 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 DNAJC30Q96LL9 226 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 LINC01587Q99440 93 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 CITED2Q99967 270 aaPredicted RBP6.91□□□□□ -1.3
HDAC3-205ENST00000469550 PRB2P02812 416 aaPredicted RBP6.91□□□□□ -1.3
HDAC3-205ENST00000469550 CHCHD5Q9BSY4 110 aa6.91□□□□□ -1.3
HDAC3-205ENST00000469550 IGKV3-20P01619 116 aa6.9□□□□□ -1.3
HDAC3-205ENST00000469550 TRACP01848 142 aa6.9□□□□□ -1.3
HDAC3-205ENST00000469550 PSMB8P28062 276 aa6.9□□□□□ -1.3
HDAC3-205ENST00000469550 CEMP1Q6PRD7 247 aaPredicted RBP6.9□□□□□ -1.3
HDAC3-205ENST00000469550 IGLV5-39A0A0G2JS06 123 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 CXCL5P42830 114 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 LINC00308Q8TCZ7 52 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 A8MTW9 85 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 A8MZ25 164 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 NPC2P61916 151 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 FAM222AQ5U5X8 452 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 FAM19A3Q7Z5A8 133 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 CDKN2A-AS1Q9UH64 79 aa6.89□□□□□ -1.31
HDAC3-205ENST00000469550 DAND5Q8N907 189 aa6.88□□□□□ -1.31
HDAC3-205ENST00000469550 PEMTQ9UBM1 199 aa6.88□□□□□ -1.31
HDAC3-205ENST00000469550 FAM236AA0A1B0GUQ0 79 aa6.88□□□□□ -1.31
HDAC3-205ENST00000469550 FAM236BA0A1B0GV22 79 aa6.88□□□□□ -1.31
HDAC3-205ENST00000469550 RNASE13Q5GAN3 156 aaKnown RBP6.88□□□□□ -1.31
HDAC3-205ENST00000469550 C3orf22Q8N5N4 141 aa6.88□□□□□ -1.31
HDAC3-205ENST00000469550 NOTCH3Q9UM47 2321 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 UQCRQO14949 82 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 IGHV3-53P01767 116 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 RBMY1A1P0DJD3 496 aaKnown RBP6.87□□□□□ -1.31
HDAC3-205ENST00000469550 RBMY1CP0DJD4 496 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 HERVK_113P63121 156 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 RBMY1FQ15415 496 aaKnown RBP6.87□□□□□ -1.31
HDAC3-205ENST00000469550 TMEM95Q3KNT9 176 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 C5orf38Q86SI9 138 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 LINC00467Q9BRT7 94 aa6.87□□□□□ -1.31
HDAC3-205ENST00000469550 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-205ENST00000469550 IGHV3-73A0A0B4J1V6 119 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 IGKV2-29A2NJV5 120 aaPredicted RBP6.86□□□□□ -1.31
HDAC3-205ENST00000469550 ZNF415Q09FC8 603 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 EGFEM1PQ0D2K5 195 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 K7EIL1 84 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 INAFM2P0DMQ5 153 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 Q6ZSN1 163 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 SMCR5Q8TEV8 140 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 LINC00526Q96FQ7 95 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 Q9H8V8 135 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 DNAH9Q9NYC9 4486 aa6.86□□□□□ -1.31
HDAC3-205ENST00000469550 PF4P02776 101 aa6.85□□□□□ -1.31
HDAC3-205ENST00000469550 BAALC-AS2P0C853 105 aa6.85□□□□□ -1.31
HDAC3-205ENST00000469550 DAZ2Q13117 558 aaKnown RBP6.85□□□□□ -1.31
HDAC3-205ENST00000469550 DAZ4Q86SG3 579 aaKnown RBP6.85□□□□□ -1.31
HDAC3-205ENST00000469550 DAZ3Q9NR90 486 aaKnown RBP6.85□□□□□ -1.31
HDAC3-205ENST00000469550 CSDC2Q9Y534 153 aaKnown RBP6.85□□□□□ -1.31
HDAC3-205ENST00000469550 LINC00242Q5T6M2 205 aa6.84□□□□□ -1.31
HDAC3-205ENST00000469550 DGAT2L7PQ6IED9 249 aa6.84□□□□□ -1.31
HDAC3-205ENST00000469550 LINC00482Q8N8I6 264 aa6.84□□□□□ -1.31
HDAC3-205ENST00000469550 IGHV3OR16-12A0A075B7B8 117 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 A0A1W2PRX2 142 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 RS1O15537 224 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 COX6A2Q02221 97 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 C9orf153Q5TBE3 101 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 SOSTDC1Q6X4U4 206 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 ZNF625Q96I27 306 aaPredicted RBP6.84□□□□□ -1.32
HDAC3-205ENST00000469550 Q9UF83 564 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 C22orf24Q9Y442 160 aa6.84□□□□□ -1.32
HDAC3-205ENST00000469550 KNCNA6PVL3 124 aa6.83□□□□□ -1.32
HDAC3-205ENST00000469550 KRTAP10-11P60412 298 aa6.83□□□□□ -1.32
HDAC3-205ENST00000469550 SMIM1B2RUZ4 78 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 RPL28P46779 137 aaKnown RBP6.82□□□□□ -1.32
HDAC3-205ENST00000469550 SYNJ2BPP57105 145 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 C11orf72Q8NBR9 251 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 B9D2Q9BPU9 175 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 OVOL2Q9BRP0 275 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 TRAV13-2A0A0B4J235 113 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 COX7CP15954 63 aa6.82□□□□□ -1.32
HDAC3-205ENST00000469550 HIST1H4AP62805 103 aaKnown RBP6.82□□□□□ -1.32
HDAC3-205ENST00000469550 A0A1B0GX51 115 aa6.81□□□□□ -1.32
HDAC3-205ENST00000469550 HTN1P15515 57 aa6.81□□□□□ -1.32
HDAC3-205ENST00000469550 C10orf99Q6UWK7 81 aa6.81□□□□□ -1.32
HDAC3-205ENST00000469550 KMT2CQ8NEZ4 4911 aaKnown RBP6.81□□□□□ -1.32
HDAC3-205ENST00000469550 IGHV3-38A0A0C4DH36 116 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 RBMY1BA6NDE4 496 aaKnown RBP6.8□□□□□ -1.32
HDAC3-205ENST00000469550 RBMY1EA6NEQ0 496 aaKnown RBP6.8□□□□□ -1.32
HDAC3-205ENST00000469550 ATOX1O00244 68 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 RBMY1DP0C7P1 496 aaKnown RBP6.8□□□□□ -1.32
HDAC3-205ENST00000469550 CRYGAP11844 174 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 MALP21145 153 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 DEFB131AP59861 70 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 UBE2E2Q96LR5 201 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 WWC2-AS2Q96NR7 200 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms