RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 A8MWP4 228 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 DLEU1O43261 78 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 KRASP01116 189 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 IGKV1-5P01602 117 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 SRP19P09132 144 aaKnown RBP2.36□□□□□ -2.03
HMGB1-207ENST00000468384 LPAR6P43657 344 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 TAS2R45P59539 299 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 RPS11P62280 158 aaKnown RBP eCLIP2.36□□□□□ -2.03
HMGB1-207ENST00000468384 RPS28P62857 69 aaKnown RBP2.36□□□□□ -2.03
HMGB1-207ENST00000468384 QRFPP83859 136 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 RHOHQ15669 191 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 GABARAPL1Q9H0R8 117 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 EFCAB1Q9HAE3 211 aa2.36□□□□□ -2.03
HMGB1-207ENST00000468384 IGKV2D-26A0A0A0MRZ7 120 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 A6NED7 52 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 BET1O15155 118 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 ZNF73O43830 326 aaPredicted RBP2.35□□□□□ -2.03
HMGB1-207ENST00000468384 FAM107AO95990 144 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 S100A11P31949 105 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 DNLZQ5SXM8 178 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 KTN1-AS1Q86SY8 53 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 NUP35Q8NFH5 326 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 OR5C1Q8NGR4 320 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 BANF2Q9H503 90 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 SPANXCQ9NY87 97 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 U3KQ87 197 aa2.35□□□□□ -2.03
HMGB1-207ENST00000468384 TRAV30A0A087WSZ9 112 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 TRDV1A0A1B0GX56 115 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 C1orf196B1AJZ1 125 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 ZNF670-ZNF695F2Z2N8 137 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 CDS2O95674 445 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 ANGP03950 147 aaKnown RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 NTF3P20783 257 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BOP23527 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 ATP6V0CP27449 155 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BBP33778 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 ZNF80P51504 273 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BDP58876 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 TAS2R30P59541 319 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 UBE2D3P61077 147 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 YPEL3P61236 119 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BCP62807 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 SUPT4H1P63272 117 aaKnown RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 SLC38A11Q08AI6 406 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST2H2BEQ16778 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 FAM229BQ4G0N7 80 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 MRPL51Q4U2R6 128 aaKnown RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 LYRM7Q5U5X0 104 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 AADACL3Q5VUY0 350 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 FAM104BQ5XKR9 115 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 PRSS54Q6PEW0 395 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 LCA10Q71F78 164 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 TMEM229BQ8NBD8 167 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 ZNF431Q8TF32 576 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 CANT1Q8WVQ1 401 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BHQ93079 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BNQ99877 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 HIST1H2BMQ99879 126 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 SMIM3Q9BZL3 60 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 NKX6-2Q9C056 277 aaPredicted RBP2.34□□□□□ -2.03
HMGB1-207ENST00000468384 IMUPQ9GZP8 106 aa2.34□□□□□ -2.03
HMGB1-207ENST00000468384 TRBV6-4A0A1B0GX49 114 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 A8MU10 97 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 C9JAW5 83 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 GABARAPH6UMI1 98 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 UBE2L6O14933 153 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 BCL2P10415 239 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 ZNF93P35789 620 aaPredicted RBP2.33□□□□□ -2.04
HMGB1-207ENST00000468384 TSPEAR-AS2P59090 65 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 SLC25A34Q6PIV7 304 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 RASL11AQ6T310 242 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 C6orf201Q7Z4U5 140 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 OR8I2Q8N0Y5 310 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 MIR7-3HGQ8N6C7 128 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 ZFAND2AQ8N6M9 145 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 OR5A1Q8NGJ0 315 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 DERL1Q9BUN8 251 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 TTTY13Q9BZ97 58 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 VCXQ9H320 206 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 IL36BQ9NZH7 164 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 CCDC167Q9P0B6 97 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 SNX12Q9UMY4 172 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 HIGD1AQ9Y241 93 aa2.33□□□□□ -2.04
HMGB1-207ENST00000468384 TMEM262E9PQX1 116 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 TAX1BP3O14907 124 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 PGLYRP1O75594 196 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-207ENST00000468384 TRGC2P03986 189 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 IGLC1P0CG04 106 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 S100PP25815 95 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 CSN1S1P47710 185 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 SMIM11AP58511 58 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 RRAS2P62070 204 aaPredicted RBP2.32□□□□□ -2.04
HMGB1-207ENST00000468384 CCL20P78556 96 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 NEDD8Q15843 81 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 WHAMMP3Q1A5X7 153 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 LINC00483Q53H64 154 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 C10orf91Q5T1B1 145 aa2.32□□□□□ -2.04
HMGB1-207ENST00000468384 RPL22L1Q6P5R6 122 aaKnown RBP2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms