RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 SS18Q15532 418 aa12.19□□□□□ -0.46
COL7A1-207ENST00000467985 CDC42SE2Q9NRR3 84 aa12.19□□□□□ -0.46
COL7A1-207ENST00000467985 CCL25O15444 150 aa12.18□□□□□ -0.46
COL7A1-207ENST00000467985 HIGD2BQ4VC39 106 aa12.18□□□□□ -0.46
COL7A1-207ENST00000467985 ZNF664Q8N3J9 261 aa12.18□□□□□ -0.46
COL7A1-207ENST00000467985 G0S2P27469 103 aa12.17□□□□□ -0.46
COL7A1-207ENST00000467985 SPACA4Q8TDM5 124 aa12.17□□□□□ -0.46
COL7A1-207ENST00000467985 CSDC2Q9Y534 153 aaKnown RBP12.17□□□□□ -0.46
COL7A1-207ENST00000467985 LRP1Q07954 4544 aaKnown RBP12.16□□□□□ -0.46
COL7A1-207ENST00000467985 IGHV1-58A0A0C4DH39 117 aa12.16□□□□□ -0.46
COL7A1-207ENST00000467985 OXTP01178 125 aa12.16□□□□□ -0.46
COL7A1-207ENST00000467985 LINC00614P0C842 121 aa12.16□□□□□ -0.46
COL7A1-207ENST00000467985 CD164L2Q6UWJ8 174 aa12.15□□□□□ -0.46
COL7A1-207ENST00000467985 CYSLTR1Q9Y271 337 aa12.15□□□□□ -0.46
COL7A1-207ENST00000467985 PKIGQ9Y2B9 76 aa12.15□□□□□ -0.46
COL7A1-207ENST00000467985 A0A087WYN8 130 aa12.14□□□□□ -0.47
COL7A1-207ENST00000467985 COX6A2Q02221 97 aa12.14□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BKO60814 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BJP06899 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 CHTF8P0CG12 524 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BOP23527 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BBP33778 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BDP58876 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BCP62807 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 RPL39P62891 51 aaKnown RBP12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST2H2BEQ16778 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BHQ93079 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 CHCHD1Q96BP2 118 aaKnown RBP12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BNQ99877 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 HIST1H2BMQ99879 126 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 PLAC8Q9NZF1 115 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 UBE2D4Q9Y2X8 147 aa12.13□□□□□ -0.47
COL7A1-207ENST00000467985 PKHD1L1Q86WI1 4243 aa12.12□□□□□ -0.47
COL7A1-207ENST00000467985 HSBP1O75506 76 aa12.12□□□□□ -0.47
COL7A1-207ENST00000467985 C2orf66Q6UXQ4 117 aa12.12□□□□□ -0.47
COL7A1-207ENST00000467985 TIMM21Q9BVV7 248 aa12.12□□□□□ -0.47
COL7A1-207ENST00000467985 FAT3Q8TDW7 4589 aa12.11□□□□□ -0.47
COL7A1-207ENST00000467985 LINC01546A6NGU7 62 aa12.11□□□□□ -0.47
COL7A1-207ENST00000467985 ZNF561-AS1K7EIQ3 104 aa12.1□□□□□ -0.47
COL7A1-207ENST00000467985 SERF1AO75920 110 aa12.1□□□□□ -0.47
COL7A1-207ENST00000467985 SPANXA1Q9NS26 97 aa12.1□□□□□ -0.47
COL7A1-207ENST00000467985 LINC00474Q9P2X8 69 aa12.1□□□□□ -0.47
COL7A1-207ENST00000467985 LINC01549A6NIU2 74 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 HBDP02042 147 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 PMCHL1Q16048 86 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 MAJINQ3KP22 176 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 C7orf33Q8WU49 177 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 URB1-AS1Q96HZ7 61 aa12.09□□□□□ -0.47
COL7A1-207ENST00000467985 IGKV2-24A0A0C4DH68 120 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 COX7A2LO14548 114 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 MALP21145 153 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 NDUFA6P56556 154 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 TOMM6Q96B49 74 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 CARD19Q96LW7 228 aa12.08□□□□□ -0.48
COL7A1-207ENST00000467985 SCGB3A1Q96QR1 104 aa12.07□□□□□ -0.48
COL7A1-207ENST00000467985 TRAV13-1A0A0B4J241 112 aa12.06□□□□□ -0.48
COL7A1-207ENST00000467985 HNRNPA3P51991 378 aaKnown RBP12.06□□□□□ -0.48
COL7A1-207ENST00000467985 SYCNQ0VAF6 134 aa12.06□□□□□ -0.48
COL7A1-207ENST00000467985 Q6ZN92 141 aa12.06□□□□□ -0.48
COL7A1-207ENST00000467985 RNASE13Q5GAN3 156 aaKnown RBP12.05□□□□□ -0.48
COL7A1-207ENST00000467985 Q6ZUT4 128 aa12.05□□□□□ -0.48
COL7A1-207ENST00000467985 STPG4Q8N801 248 aa12.05□□□□□ -0.48
COL7A1-207ENST00000467985 LINC00526Q96FQ7 95 aa12.05□□□□□ -0.48
COL7A1-207ENST00000467985 PYGO1Q9Y3Y4 419 aa12.05□□□□□ -0.48
COL7A1-207ENST00000467985 A0A096LNI7 61 aa12.04□□□□□ -0.48
COL7A1-207ENST00000467985 S100A6P06703 90 aa12.04□□□□□ -0.48
COL7A1-207ENST00000467985 PAPPA-AS1Q5QFB9 102 aa12.04□□□□□ -0.48
COL7A1-207ENST00000467985 Q6ZRU5 148 aa12.04□□□□□ -0.48
COL7A1-207ENST00000467985 FAM19A2Q8N3H0 131 aa12.04□□□□□ -0.48
COL7A1-207ENST00000467985 APOMO95445 188 aa12.03□□□□□ -0.48
COL7A1-207ENST00000467985 SERTAD4-AS1Q5TG53 156 aa12.03□□□□□ -0.48
COL7A1-207ENST00000467985 ERASQ7Z444 233 aa12.03□□□□□ -0.48
COL7A1-207ENST00000467985 TMEM141Q96I45 108 aa12.03□□□□□ -0.48
COL7A1-207ENST00000467985 TIMM17AQ99595 171 aa12.03□□□□□ -0.48
COL7A1-207ENST00000467985 IGLV4-69A0A075B6H9 119 aa12.02□□□□□ -0.49
COL7A1-207ENST00000467985 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.02□□□□□ -0.49
COL7A1-207ENST00000467985 LINC00310P59036 64 aa12.02□□□□□ -0.49
COL7A1-207ENST00000467985 MRPS36P82909 103 aaKnown RBP12.02□□□□□ -0.49
COL7A1-207ENST00000467985 TEX43Q6ZNM6 134 aa12.02□□□□□ -0.49
COL7A1-207ENST00000467985 OPRPNQ99935 248 aaPredicted RBP12.02□□□□□ -0.49
COL7A1-207ENST00000467985 C2orf88Q9BSF0 95 aa12.02□□□□□ -0.49
COL7A1-207ENST00000467985 IGLV4-3A0A075B6K6 122 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 A0A096LNJ9 63 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 ATP5LO75964 103 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 NPSP0C0P6 89 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 C2orf48Q96LS8 159 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 VCX2Q9H322 139 aa12.01□□□□□ -0.49
COL7A1-207ENST00000467985 LOC107984640A0A0U1RRK4 108 aa12□□□□□ -0.49
COL7A1-207ENST00000467985 IGIPA6NJ69 53 aa12□□□□□ -0.49
COL7A1-207ENST00000467985 IFITM10A6NMD0 228 aa12□□□□□ -0.49
COL7A1-207ENST00000467985 NUPR1O60356 82 aa12□□□□□ -0.49
COL7A1-207ENST00000467985 LEPROTL1O95214 131 aa11.99□□□□□ -0.49
COL7A1-207ENST00000467985 PDZD11Q5EBL8 140 aa11.99□□□□□ -0.49
COL7A1-207ENST00000467985 C5orf38Q86SI9 138 aa11.99□□□□□ -0.49
COL7A1-207ENST00000467985 CAMK2N2Q96S95 79 aa11.99□□□□□ -0.49
COL7A1-207ENST00000467985 COA6Q5JTJ3 125 aaKnown RBP11.98□□□□□ -0.49
COL7A1-207ENST00000467985 OR10D4PQ8NGN7 298 aa11.98□□□□□ -0.49
COL7A1-207ENST00000467985 FAM104AQ969W3 186 aa11.98□□□□□ -0.49
COL7A1-207ENST00000467985 HSPB8Q9UJY1 196 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms