RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 C5orf38Q86SI9 138 aa12.92□□□□□ -0.34
COL9A3-204ENST00000463487 IGHV3OR16-9A0A0B4J2B5 98 aa12.91□□□□□ -0.34
COL9A3-204ENST00000463487 CNBPP62633 177 aaKnown RBP12.91□□□□□ -0.34
COL9A3-204ENST00000463487 HERVK_113P63121 156 aa12.91□□□□□ -0.34
COL9A3-204ENST00000463487 PMCHL1Q16048 86 aa12.91□□□□□ -0.34
COL9A3-204ENST00000463487 LINC00242Q5T6M2 205 aa12.91□□□□□ -0.34
COL9A3-204ENST00000463487 GEMIN7Q9H840 131 aaKnown RBP12.91□□□□□ -0.34
COL9A3-204ENST00000463487 A0A096LNJ9 63 aa12.9□□□□□ -0.34
COL9A3-204ENST00000463487 PMVKQ15126 192 aa12.9□□□□□ -0.34
COL9A3-204ENST00000463487 PDZD11Q5EBL8 140 aa12.89□□□□□ -0.35
COL9A3-204ENST00000463487 ZC2HC1BQ5TFG8 222 aa12.89□□□□□ -0.35
COL9A3-204ENST00000463487 FAM19A3Q7Z5A8 133 aa12.89□□□□□ -0.35
COL9A3-204ENST00000463487 OR10D4PQ8NGN7 298 aa12.89□□□□□ -0.35
COL9A3-204ENST00000463487 CDK2AP2O75956 126 aa12.88□□□□□ -0.35
COL9A3-204ENST00000463487 CST9LQ9H4G1 147 aa12.88□□□□□ -0.35
COL9A3-204ENST00000463487 A0A087WZ39 114 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 NDUFA6P56556 154 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 KRTAP10-1P60331 282 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 LINC01561Q8N1V8 128 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 C9orf163Q8N9P6 203 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 PKIGQ9Y2B9 76 aa12.87□□□□□ -0.35
COL9A3-204ENST00000463487 IGHV3-64A0A075B6Q5 118 aa12.86□□□□□ -0.35
COL9A3-204ENST00000463487 SERF1AO75920 110 aa12.86□□□□□ -0.35
COL9A3-204ENST00000463487 ORAOV1Q8WV07 137 aa12.86□□□□□ -0.35
COL9A3-204ENST00000463487 BIRC6Q9NR09 4857 aa12.86□□□□□ -0.35
COL9A3-204ENST00000463487 TINCRA0A1B0GVN0 87 aa12.85□□□□□ -0.35
COL9A3-204ENST00000463487 COX6A2Q02221 97 aa12.85□□□□□ -0.35
COL9A3-204ENST00000463487 SPAG11BQ08648 103 aa12.85□□□□□ -0.35
COL9A3-204ENST00000463487 PACRGQ96M98 296 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-204ENST00000463487 DNAH11Q96DT5 4516 aa12.84□□□□□ -0.35
COL9A3-204ENST00000463487 CARD19Q96LW7 228 aa12.84□□□□□ -0.35
COL9A3-204ENST00000463487 A0A0J9YXV3 536 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 F8WDY8 70 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 LINC01620Q4KN68 170 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 LINC00469Q8N7U9 141 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 IFI27L1Q96BM0 104 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 C2orf48Q96LS8 159 aa12.83□□□□□ -0.36
COL9A3-204ENST00000463487 IGLV4-69A0A075B6H9 119 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BKO60814 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BJP06899 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BOP23527 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BBP33778 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BDP58876 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BCP62807 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 SYCNQ0VAF6 134 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST2H2BEQ16778 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.82□□□□□ -0.36
COL9A3-204ENST00000463487 FAM19A2Q8N3H0 131 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BHQ93079 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 CAMK2N2Q96S95 79 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BNQ99877 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 HIST1H2BMQ99879 126 aa12.82□□□□□ -0.36
COL9A3-204ENST00000463487 LEPROTL1O95214 131 aa12.81□□□□□ -0.36
COL9A3-204ENST00000463487 HSPB8Q9UJY1 196 aa12.81□□□□□ -0.36
COL9A3-204ENST00000463487 H3BRM9 83 aa12.8□□□□□ -0.36
COL9A3-204ENST00000463487 SLPIP03973 132 aa12.8□□□□□ -0.36
COL9A3-204ENST00000463487 PRSS2P07478 247 aa12.8□□□□□ -0.36
COL9A3-204ENST00000463487 LINC00526Q96FQ7 95 aa12.8□□□□□ -0.36
COL9A3-204ENST00000463487 CDKN2A-AS1Q9UH64 79 aa12.8□□□□□ -0.36
COL9A3-204ENST00000463487 NDUFA1O15239 70 aa12.78□□□□□ -0.36
COL9A3-204ENST00000463487 IGLC3P0DOY3 106 aa12.78□□□□□ -0.36
COL9A3-204ENST00000463487 Q6ZSA8 131 aa12.78□□□□□ -0.36
COL9A3-204ENST00000463487 CHAC1Q9BUX1 264 aa12.78□□□□□ -0.36
COL9A3-204ENST00000463487 IGLV5-45A0A087WSX0 123 aa12.77□□□□□ -0.37
COL9A3-204ENST00000463487 TRAV12-1A0A0B4J245 112 aa12.77□□□□□ -0.37
COL9A3-204ENST00000463487 LINC00310P59036 64 aa12.77□□□□□ -0.37
COL9A3-204ENST00000463487 CHTOPQ9Y3Y2 248 aaKnown RBP12.77□□□□□ -0.37
COL9A3-204ENST00000463487 SDIM1Q6ZPB5 146 aa12.76□□□□□ -0.37
COL9A3-204ENST00000463487 TOMM7Q9P0U1 55 aa12.76□□□□□ -0.37
COL9A3-204ENST00000463487 C6orf226Q5I0X4 101 aa12.75□□□□□ -0.37
COL9A3-204ENST00000463487 Q6ZRU5 148 aa12.75□□□□□ -0.37
COL9A3-204ENST00000463487 Q8IZM0 81 aa12.75□□□□□ -0.37
COL9A3-204ENST00000463487 CKS1BP61024 79 aa12.74□□□□□ -0.37
COL9A3-204ENST00000463487 MRPL35Q9NZE8 188 aaKnown RBP12.74□□□□□ -0.37
COL9A3-204ENST00000463487 FAM30AQ9NZY2 134 aa12.74□□□□□ -0.37
COL9A3-204ENST00000463487 DYNC1H1Q14204 4646 aaKnown RBP12.74□□□□□ -0.37
COL9A3-204ENST00000463487 NUPR1O60356 82 aa12.73□□□□□ -0.37
COL9A3-204ENST00000463487 FABP4P15090 132 aa12.73□□□□□ -0.37
COL9A3-204ENST00000463487 RNF151Q2KHN1 245 aa12.73□□□□□ -0.37
COL9A3-204ENST00000463487 LINC00474Q9P2X8 69 aa12.73□□□□□ -0.37
COL9A3-204ENST00000463487 DNAH5Q8TE73 4624 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 LOC107984640A0A0U1RRK4 108 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 SMIM1B2RUZ4 78 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 F8VRH5 84 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 CXCL5P42830 114 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 XGP55808 180 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 TMEM170BQ5T4T1 132 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 DPH3Q96FX2 82 aa12.72□□□□□ -0.37
COL9A3-204ENST00000463487 H0Y8G0 127 aa12.71□□□□□ -0.37
COL9A3-204ENST00000463487 KIAA0087Q14695 138 aa12.71□□□□□ -0.37
COL9A3-204ENST00000463487 MAP1LC3CQ9BXW4 147 aa12.71□□□□□ -0.37
COL9A3-204ENST00000463487 TRBV30A0A0K0K1B3 111 aa12.7□□□□□ -0.38
COL9A3-204ENST00000463487 SPINK8P0C7L1 97 aa12.7□□□□□ -0.38
COL9A3-204ENST00000463487 ZNF22P17026 224 aaPredicted RBP12.7□□□□□ -0.38
COL9A3-204ENST00000463487 COA6Q5JTJ3 125 aaKnown RBP12.7□□□□□ -0.38
COL9A3-204ENST00000463487 LRP1BQ9NZR2 4599 aa12.7□□□□□ -0.38
COL9A3-204ENST00000463487 C11orf86A6NJI1 115 aa12.69□□□□□ -0.38
COL9A3-204ENST00000463487 UNQ6190/PRO20217Q6UXQ8 127 aa12.69□□□□□ -0.38
COL9A3-204ENST00000463487 SCXQ7RTU7 201 aa12.69□□□□□ -0.38
COL9A3-204ENST00000463487 COX7B2Q8TF08 81 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms