RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 Q5VSD8 79 aa12.89□□□□□ -0.35
COL9A3-202ENST00000452372 TOMM6Q96B49 74 aa12.89□□□□□ -0.35
COL9A3-202ENST00000452372 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.88□□□□□ -0.35
COL9A3-202ENST00000452372 COX7A2LO14548 114 aa12.88□□□□□ -0.35
COL9A3-202ENST00000452372 FA2HQ7L5A8 372 aa12.88□□□□□ -0.35
COL9A3-202ENST00000452372 HAMPP81172 84 aa12.87□□□□□ -0.35
COL9A3-202ENST00000452372 Q6ZN92 141 aa12.87□□□□□ -0.35
COL9A3-202ENST00000452372 TEX43Q6ZNM6 134 aa12.87□□□□□ -0.35
COL9A3-202ENST00000452372 C18orf32Q8TCD1 76 aa12.87□□□□□ -0.35
COL9A3-202ENST00000452372 LINC01549A6NIU2 74 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 MALP21145 153 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 C5orf38Q86SI9 138 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 AMELXQ99217 191 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 TIMM17AQ99595 171 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 VCX2Q9H322 139 aa12.86□□□□□ -0.35
COL9A3-202ENST00000452372 IGHV3OR16-9A0A0B4J2B5 98 aa12.85□□□□□ -0.35
COL9A3-202ENST00000452372 SDIM1Q6ZPB5 146 aa12.85□□□□□ -0.35
COL9A3-202ENST00000452372 ERASQ7Z444 233 aa12.85□□□□□ -0.35
COL9A3-202ENST00000452372 C2orf88Q9BSF0 95 aa12.85□□□□□ -0.35
COL9A3-202ENST00000452372 PAPPA-AS1Q5QFB9 102 aa12.84□□□□□ -0.35
COL9A3-202ENST00000452372 ZC2HC1BQ5TFG8 222 aa12.84□□□□□ -0.35
COL9A3-202ENST00000452372 LINC00173Q6ZV60 143 aa12.84□□□□□ -0.35
COL9A3-202ENST00000452372 ZNF561-AS1K7EIQ3 104 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 APOMO95445 188 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 LINC00614P0C842 121 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 UBE2D1P51668 147 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 LINC00242Q5T6M2 205 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 URB1-AS1Q96HZ7 61 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 SCGB3A1Q96QR1 104 aa12.83□□□□□ -0.36
COL9A3-202ENST00000452372 IGHV3-64A0A075B6Q5 118 aa12.82□□□□□ -0.36
COL9A3-202ENST00000452372 LINC00526Q96FQ7 95 aa12.82□□□□□ -0.36
COL9A3-202ENST00000452372 RAB5BP61020 215 aa12.81□□□□□ -0.36
COL9A3-202ENST00000452372 COX6A2Q02221 97 aa12.81□□□□□ -0.36
COL9A3-202ENST00000452372 CHAC1Q9BUX1 264 aa12.81□□□□□ -0.36
COL9A3-202ENST00000452372 FAM19A3Q7Z5A8 133 aa12.8□□□□□ -0.36
COL9A3-202ENST00000452372 A0A087WZ39 114 aa12.79□□□□□ -0.36
COL9A3-202ENST00000452372 SCXQ7RTU7 201 aa12.79□□□□□ -0.36
COL9A3-202ENST00000452372 IGLV4-69A0A075B6H9 119 aa12.78□□□□□ -0.36
COL9A3-202ENST00000452372 SYCNQ0VAF6 134 aa12.78□□□□□ -0.36
COL9A3-202ENST00000452372 OR10D4PQ8NGN7 298 aa12.78□□□□□ -0.36
COL9A3-202ENST00000452372 A0A096LNJ9 63 aa12.77□□□□□ -0.37
COL9A3-202ENST00000452372 COLCA2A8K830 154 aa12.77□□□□□ -0.37
COL9A3-202ENST00000452372 CIRBP-AS1Q8TBR5 109 aa12.77□□□□□ -0.37
COL9A3-202ENST00000452372 C2orf48Q96LS8 159 aa12.77□□□□□ -0.37
COL9A3-202ENST00000452372 FAM229AH3BQW9 127 aa12.76□□□□□ -0.37
COL9A3-202ENST00000452372 TRGC2P03986 189 aa12.76□□□□□ -0.37
COL9A3-202ENST00000452372 LINC01561Q8N1V8 128 aa12.76□□□□□ -0.37
COL9A3-202ENST00000452372 ORAOV1Q8WV07 137 aa12.76□□□□□ -0.37
COL9A3-202ENST00000452372 CARD19Q96LW7 228 aa12.76□□□□□ -0.37
COL9A3-202ENST00000452372 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-202ENST00000452372 HBDP02042 147 aa12.75□□□□□ -0.37
COL9A3-202ENST00000452372 SEC11AP67812 179 aa12.75□□□□□ -0.37
COL9A3-202ENST00000452372 SPAG11BQ08648 103 aa12.75□□□□□ -0.37
COL9A3-202ENST00000452372 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-202ENST00000452372 PANO1I0J062 215 aa12.74□□□□□ -0.37
COL9A3-202ENST00000452372 CIRBPQ14011 172 aaKnown RBP12.74□□□□□ -0.37
COL9A3-202ENST00000452372 CAMK2N2Q96S95 79 aa12.74□□□□□ -0.37
COL9A3-202ENST00000452372 CST9LQ9H4G1 147 aa12.74□□□□□ -0.37
COL9A3-202ENST00000452372 HERVK_113P63121 156 aa12.73□□□□□ -0.37
COL9A3-202ENST00000452372 Q6ZRU5 148 aa12.73□□□□□ -0.37
COL9A3-202ENST00000452372 CHCHD1Q96BP2 118 aaKnown RBP12.73□□□□□ -0.37
COL9A3-202ENST00000452372 F8WDY8 70 aa12.72□□□□□ -0.37
COL9A3-202ENST00000452372 PMVKQ15126 192 aa12.72□□□□□ -0.37
COL9A3-202ENST00000452372 PMCHL1Q16048 86 aa12.72□□□□□ -0.37
COL9A3-202ENST00000452372 PDZD11Q5EBL8 140 aa12.72□□□□□ -0.37
COL9A3-202ENST00000452372 GEMIN7Q9H840 131 aaKnown RBP12.72□□□□□ -0.37
COL9A3-202ENST00000452372 A0A0J9YXV3 536 aa12.71□□□□□ -0.37
COL9A3-202ENST00000452372 PKIGQ9Y2B9 76 aa12.71□□□□□ -0.37
COL9A3-202ENST00000452372 TINCRA0A1B0GVN0 87 aa12.7□□□□□ -0.38
COL9A3-202ENST00000452372 SCO1O75880 301 aa12.7□□□□□ -0.38
COL9A3-202ENST00000452372 CHTF8P0CG12 524 aa12.7□□□□□ -0.38
COL9A3-202ENST00000452372 KIAA0087Q14695 138 aa12.7□□□□□ -0.38
COL9A3-202ENST00000452372 CDKN2A-AS1Q9UH64 79 aa12.7□□□□□ -0.38
COL9A3-202ENST00000452372 BAGE3Q86Y29 109 aa12.69□□□□□ -0.38
COL9A3-202ENST00000452372 SPACA4Q8TDM5 124 aa12.69□□□□□ -0.38
COL9A3-202ENST00000452372 DPH3Q96FX2 82 aa12.69□□□□□ -0.38
COL9A3-202ENST00000452372 ATP5LO75964 103 aa12.68□□□□□ -0.38
COL9A3-202ENST00000452372 RNF151Q2KHN1 245 aa12.68□□□□□ -0.38
COL9A3-202ENST00000452372 LINC00528Q8N1L1 170 aa12.68□□□□□ -0.38
COL9A3-202ENST00000452372 MRPL35Q9NZE8 188 aaKnown RBP12.68□□□□□ -0.38
COL9A3-202ENST00000452372 A0A096LNI7 61 aa12.67□□□□□ -0.38
COL9A3-202ENST00000452372 NDUFA1O15239 70 aa12.67□□□□□ -0.38
COL9A3-202ENST00000452372 IGLV5-45A0A087WSX0 123 aa12.66□□□□□ -0.38
COL9A3-202ENST00000452372 A0A087WYN8 130 aa12.66□□□□□ -0.38
COL9A3-202ENST00000452372 IGKV2-24A0A0C4DH68 120 aa12.66□□□□□ -0.38
COL9A3-202ENST00000452372 LOC107984640A0A0U1RRK4 108 aa12.66□□□□□ -0.38
COL9A3-202ENST00000452372 HSBP1O75506 76 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 NDUFA6P56556 154 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 MAJINQ3KP22 176 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 UNQ6190/PRO20217Q6UXQ8 127 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 LINC00469Q8N7U9 141 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 PACRGQ96M98 296 aaPredicted RBP12.65□□□□□ -0.38
COL9A3-202ENST00000452372 LINC00474Q9P2X8 69 aa12.65□□□□□ -0.38
COL9A3-202ENST00000452372 LRP1Q07954 4544 aaKnown RBP12.65□□□□□ -0.39
COL9A3-202ENST00000452372 C10orf25Q5T742 122 aa12.64□□□□□ -0.39
COL9A3-202ENST00000452372 PLAC8Q9NZF1 115 aa12.64□□□□□ -0.39
COL9A3-202ENST00000452372 Q8IZM0 81 aa12.63□□□□□ -0.39
COL9A3-202ENST00000452372 PLA2G1BP04054 148 aaKnown RBP12.62□□□□□ -0.39
COL9A3-202ENST00000452372 PRSS2P07478 247 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 IGLC3P0DOY3 106 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms