RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 F8W036 122 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 CAMPP49913 170 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 Q6ZRP5 223 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 AMN1Q8IY45 258 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 NUP35Q8NFH5 326 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 LINC01600Q96MT4 127 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 HMCN2Q8NDA2 5059 aa4.45□□□□□ -1.7
VPS41-208ENST00000448833 TRBV24-1A0A075B6N3 115 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 A0A096LNI7 61 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 SRP19P09132 144 aaKnown RBP4.44□□□□□ -1.7
VPS41-208ENST00000448833 MT1HL1P0DM35 61 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 CKS2P33552 79 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 RPL32P62910 135 aaKnown RBP4.44□□□□□ -1.7
VPS41-208ENST00000448833 PRR3P79522 188 aaKnown RBP4.44□□□□□ -1.7
VPS41-208ENST00000448833 PEA15Q15121 130 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 RNF151Q2KHN1 245 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 KRTAP5-3Q6L8H2 238 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 C2orf48Q96LS8 159 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 NAT8Q9UHE5 227 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 V9GYV3 84 aa4.44□□□□□ -1.7
VPS41-208ENST00000448833 SMIM27A0A1W2PRY6 76 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 HSBP1L1C9JCN9 74 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 PPBPP02775 128 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 PTTG1IPP53801 180 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 FAM104BQ5XKR9 115 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 OR10D4PQ8NGN7 298 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 CAMK2N2Q96S95 79 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 UBE2D4Q9Y2X8 147 aa4.43□□□□□ -1.7
VPS41-208ENST00000448833 UBR4Q5T4S7 5183 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 TRAV13-1A0A0B4J241 112 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 A0A0J9YXV3 536 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 GAS8-AS1O95177 125 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 RAB5AP20339 215 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 RPL23P62829 140 aaKnown RBP4.42□□□□□ -1.7
VPS41-208ENST00000448833 GAGE2BQ13066 116 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 ADIRFQ15847 76 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 NRACQ8N912 160 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 IMMP2LQ96T52 175 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 SPANXA1Q9NS26 97 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 CBY1Q9Y3M2 126 aa4.42□□□□□ -1.7
VPS41-208ENST00000448833 MRPL51Q4U2R6 128 aaKnown RBP4.41□□□□□ -1.7
VPS41-208ENST00000448833 LINC00526Q96FQ7 95 aa4.41□□□□□ -1.7
VPS41-208ENST00000448833 A4D1N5 150 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 H0Y8G0 127 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 SMKR1H3BMG3 65 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 NDUFA1O15239 70 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 TNFRSF6BO95407 300 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 MT-ND6P03923 174 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 HBBP68871 147 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 MRPS36P82909 103 aaKnown RBP4.4□□□□□ -1.71
VPS41-208ENST00000448833 SRSF9Q13242 221 aaKnown RBP eCLIP4.4□□□□□ -1.71
VPS41-208ENST00000448833 ATP5L2Q7Z4Y8 100 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 C5orf38Q86SI9 138 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 SMIM2Q9BVW6 85 aa4.4□□□□□ -1.71
VPS41-208ENST00000448833 MRPL35Q9NZE8 188 aaKnown RBP4.4□□□□□ -1.71
VPS41-208ENST00000448833 TGIF2-C20orf24A0A0A6YYL0 155 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 G0S2P27469 103 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 IFI27P40305 119 aaPredicted RBP4.39□□□□□ -1.71
VPS41-208ENST00000448833 RAB14P61106 215 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 RPL18AQ02543 176 aaKnown RBP4.39□□□□□ -1.71
VPS41-208ENST00000448833 SPAG11BQ08648 103 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 ORMDL3Q8N138 153 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 ORAOV1Q8WV07 137 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 LAMTOR2Q9Y2Q5 125 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 PYGO1Q9Y3Y4 419 aa4.39□□□□□ -1.71
VPS41-208ENST00000448833 IGHV3OR16-9A0A0B4J2B5 98 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 IFITM10A6NMD0 228 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 D6R8Y8 96 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.38□□□□□ -1.71
VPS41-208ENST00000448833 K7EMI3 77 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 TLX1NBP0CAT3 122 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 KRTAP10-8P60410 259 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 NDUFA5Q16718 116 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 C9orf116Q5BN46 136 aaPredicted RBP4.38□□□□□ -1.71
VPS41-208ENST00000448833 RNASE13Q5GAN3 156 aaKnown RBP4.38□□□□□ -1.71
VPS41-208ENST00000448833 TMEM136Q6ZRR5 245 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 Q6ZUT4 128 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 DIRC1Q969H9 104 aa4.38□□□□□ -1.71
VPS41-208ENST00000448833 A0A1W2PNN7 141 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 NPSP0C0P6 89 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 RPL39P62891 51 aaKnown RBP4.37□□□□□ -1.71
VPS41-208ENST00000448833 PNRC1Q12796 327 aaPredicted RBP4.37□□□□□ -1.71
VPS41-208ENST00000448833 PAPPA-AS1Q5QFB9 102 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 MRPL54Q6P161 138 aaKnown RBP4.37□□□□□ -1.71
VPS41-208ENST00000448833 Q6ZN92 141 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 LINC01561Q8N1V8 128 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 TMEM141Q96I45 108 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 PRELID3AQ96N28 172 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 C2orf88Q9BSF0 95 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 PSORS1C2Q9UIG4 136 aa4.37□□□□□ -1.71
VPS41-208ENST00000448833 A0A087WZ39 114 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 TRBV30A0A0K0K1B3 111 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 A0A1B0GXF2 115 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 MT-ND4LP03901 98 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 LINC00310P59036 64 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 SEC11AP67812 179 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 C1orf137Q5JT78 98 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 TEX43Q6ZNM6 134 aa4.36□□□□□ -1.71
VPS41-208ENST00000448833 PACRGQ96M98 296 aaPredicted RBP4.36□□□□□ -1.71
VPS41-208ENST00000448833 OPRPNQ99935 248 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms