RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CKS2P33552 79 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 RNF151Q2KHN1 245 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 SPINK6Q6UWN8 80 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 Q6ZRP5 223 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 AMN1Q8IY45 258 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 PRSS3P2Q8NHM4 247 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 C2orf48Q96LS8 159 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 V9GYV3 84 aa4.92□□□□□ -1.62
CD44-211ENST00000442151 PHOX2AO14813 284 aa4.91□□□□□ -1.62
CD44-211ENST00000442151 CAMPP49913 170 aa4.91□□□□□ -1.62
CD44-211ENST00000442151 ADIRFQ15847 76 aa4.91□□□□□ -1.62
CD44-211ENST00000442151 FAM104BQ5XKR9 115 aa4.91□□□□□ -1.62
CD44-211ENST00000442151 PANO1I0J062 215 aa4.9□□□□□ -1.62
CD44-211ENST00000442151 RAB5AP20339 215 aa4.9□□□□□ -1.62
CD44-211ENST00000442151 RPL23P62829 140 aaKnown RBP4.9□□□□□ -1.62
CD44-211ENST00000442151 CAMK2N2Q96S95 79 aa4.9□□□□□ -1.62
CD44-211ENST00000442151 SPANXA1Q9NS26 97 aa4.9□□□□□ -1.62
CD44-211ENST00000442151 TRBV24-1A0A075B6N3 115 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 SMIM27A0A1W2PRY6 76 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 SCGB1D1O95968 90 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 G0S2P27469 103 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 MRPL51Q4U2R6 128 aaKnown RBP4.9□□□□□ -1.63
CD44-211ENST00000442151 OR10D4PQ8NGN7 298 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 IMMP2LQ96T52 175 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 UBE2D4Q9Y2X8 147 aa4.9□□□□□ -1.63
CD44-211ENST00000442151 TRAV13-1A0A0B4J241 112 aa4.89□□□□□ -1.63
CD44-211ENST00000442151 PTTG1IPP53801 180 aa4.89□□□□□ -1.63
CD44-211ENST00000442151 HBBP68871 147 aa4.89□□□□□ -1.63
CD44-211ENST00000442151 GAGE2BQ13066 116 aa4.89□□□□□ -1.63
CD44-211ENST00000442151 NRACQ8N912 160 aa4.89□□□□□ -1.63
CD44-211ENST00000442151 A0A096LNI7 61 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 PRR3P79522 188 aaKnown RBP4.88□□□□□ -1.63
CD44-211ENST00000442151 MRPS36P82909 103 aaKnown RBP4.88□□□□□ -1.63
CD44-211ENST00000442151 ATP5L2Q7Z4Y8 100 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 LINC01600Q96MT4 127 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 SMKR1H3BMG3 65 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 HNRNPA3P51991 378 aaKnown RBP4.88□□□□□ -1.63
CD44-211ENST00000442151 ORMDL3Q8N138 153 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 LAMTOR2Q9Y2Q5 125 aa4.88□□□□□ -1.63
CD44-211ENST00000442151 UBR4Q5T4S7 5183 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 TGIF2-C20orf24A0A0A6YYL0 155 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 NDUFA1O15239 70 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 IFI27P40305 119 aaPredicted RBP4.87□□□□□ -1.63
CD44-211ENST00000442151 RAB14P61106 215 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 SPAG11BQ08648 103 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 C5orf38Q86SI9 138 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 SMIM2Q9BVW6 85 aa4.87□□□□□ -1.63
CD44-211ENST00000442151 K7EMI3 77 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 GAS8-AS1O95177 125 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 MT-ND6P03923 174 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 PNRC1Q12796 327 aaPredicted RBP4.86□□□□□ -1.63
CD44-211ENST00000442151 TMEM136Q6ZRR5 245 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 LINC01561Q8N1V8 128 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 C2orf88Q9BSF0 95 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 MRPL35Q9NZE8 188 aaKnown RBP4.86□□□□□ -1.63
CD44-211ENST00000442151 PYGO1Q9Y3Y4 419 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 IFITM10A6NMD0 228 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 MT-ND4LP03901 98 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 NPSP0C0P6 89 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 RPL18AQ02543 176 aaKnown RBP4.86□□□□□ -1.63
CD44-211ENST00000442151 PAPPA-AS1Q5QFB9 102 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 Q6ZN92 141 aa4.86□□□□□ -1.63
CD44-211ENST00000442151 A0A0J9YXV3 536 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 D6R8Y8 96 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 SEC11AP67812 179 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 Q6ZUT4 128 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 ORAOV1Q8WV07 137 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 LINC00526Q96FQ7 95 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 PACRGQ96M98 296 aaPredicted RBP4.85□□□□□ -1.63
CD44-211ENST00000442151 MAP1LC3AQ9H492 121 aa4.85□□□□□ -1.63
CD44-211ENST00000442151 TLX1NBP0CAT3 122 aa4.84□□□□□ -1.63
CD44-211ENST00000442151 MT1HL1P0DM35 61 aa4.84□□□□□ -1.63
CD44-211ENST00000442151 SRSF9Q13242 221 aaKnown RBP eCLIP4.84□□□□□ -1.63
CD44-211ENST00000442151 NDUFA5Q16718 116 aa4.84□□□□□ -1.63
CD44-211ENST00000442151 ORMDL2Q53FV1 153 aa4.84□□□□□ -1.63
CD44-211ENST00000442151 MRPL54Q6P161 138 aaKnown RBP4.84□□□□□ -1.63
CD44-211ENST00000442151 PRELID3AQ96N28 172 aa4.84□□□□□ -1.63
CD44-211ENST00000442151 LINC01549A6NIU2 74 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 PRSS2P07478 247 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 C9orf116Q5BN46 136 aaPredicted RBP4.83□□□□□ -1.64
CD44-211ENST00000442151 TEX43Q6ZNM6 134 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 DIRC1Q969H9 104 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 IGHV3OR16-9A0A0B4J2B5 98 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 TRBV30A0A0K0K1B3 111 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 A0A1B0GXF2 115 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.83□□□□□ -1.64
CD44-211ENST00000442151 RNASE13Q5GAN3 156 aaKnown RBP4.83□□□□□ -1.64
CD44-211ENST00000442151 TMEM141Q96I45 108 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 VCX2Q9H322 139 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 CYSLTR1Q9Y271 337 aa4.83□□□□□ -1.64
CD44-211ENST00000442151 A0A087WZ39 114 aa4.82□□□□□ -1.64
CD44-211ENST00000442151 NPYP01303 97 aa4.82□□□□□ -1.64
CD44-211ENST00000442151 RPL39P62891 51 aaKnown RBP4.82□□□□□ -1.64
CD44-211ENST00000442151 Q8N8P6 123 aa4.82□□□□□ -1.64
CD44-211ENST00000442151 HMCN2Q8NDA2 5059 aa4.82□□□□□ -1.64
CD44-211ENST00000442151 A0A1W2PNN7 141 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 C9JQL5 133 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 KRTAP10-8P60410 259 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 CKS1BP61024 79 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 C1orf137Q5JT78 98 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms