RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PCP4L1A6NKN8 68 aa12.6□□□□□ -0.39
CLN3-206ENST00000360019 DNAH10OSP0CZ25 163 aa12.6□□□□□ -0.39
CLN3-206ENST00000360019 DNAH10Q8IVF4 4471 aa12.59□□□□□ -0.39
CLN3-206ENST00000360019 HERVK_113P61574 105 aa12.59□□□□□ -0.39
CLN3-206ENST00000360019 ENHOQ6UWT2 76 aa12.59□□□□□ -0.39
CLN3-206ENST00000360019 PCP2Q8IVA1 136 aa12.59□□□□□ -0.39
CLN3-206ENST00000360019 TTTY13Q9BZ97 58 aa12.59□□□□□ -0.39
CLN3-206ENST00000360019 COX8AP10176 69 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 SS18Q15532 418 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 ZFAND6Q6FIF0 208 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 IGHV3-64A0A075B6Q5 118 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 SIVA1O15304 175 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 CCL25O15444 150 aa12.58□□□□□ -0.4
CLN3-206ENST00000360019 IGLV10-54A0A075B6I4 117 aa12.57□□□□□ -0.4
CLN3-206ENST00000360019 TRAV8-3A0A0A6YYJ7 113 aa12.57□□□□□ -0.4
CLN3-206ENST00000360019 IGHV3OR16-9A0A0B4J2B5 98 aa12.57□□□□□ -0.4
CLN3-206ENST00000360019 SPINK8P0C7L1 97 aa12.57□□□□□ -0.4
CLN3-206ENST00000360019 XCL1P47992 114 aa12.57□□□□□ -0.4
CLN3-206ENST00000360019 H3BRM9 83 aa12.56□□□□□ -0.4
CLN3-206ENST00000360019 TSPEAR-AS2P59090 65 aa12.56□□□□□ -0.4
CLN3-206ENST00000360019 CHCHD10Q8WYQ3 142 aaPredicted RBP12.56□□□□□ -0.4
CLN3-206ENST00000360019 UBE2WQ96B02 151 aa12.56□□□□□ -0.4
CLN3-206ENST00000360019 UQCR10Q9UDW1 63 aa12.56□□□□□ -0.4
CLN3-206ENST00000360019 MIEN1Q9BRT3 115 aa12.55□□□□□ -0.4
CLN3-206ENST00000360019 IGHV1-58A0A0C4DH39 117 aa12.55□□□□□ -0.4
CLN3-206ENST00000360019 CRPP02741 224 aa12.55□□□□□ -0.4
CLN3-206ENST00000360019 SLC25A34Q6PIV7 304 aa12.55□□□□□ -0.4
CLN3-206ENST00000360019 BOD1L2Q8IYS8 172 aa12.55□□□□□ -0.4
CLN3-206ENST00000360019 SMIM1B2RUZ4 78 aa12.54□□□□□ -0.4
CLN3-206ENST00000360019 MUC7Q8TAX7 377 aa12.54□□□□□ -0.4
CLN3-206ENST00000360019 LEPROTO15243 131 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 MAPKAPK5-AS1Q8N8E1 139 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 Q9H8V8 135 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 A0A087WZ39 114 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 DDTP30046 118 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 CD164L2Q6UWJ8 174 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 C5orf38Q86SI9 138 aa12.53□□□□□ -0.4
CLN3-206ENST00000360019 IGLV5-39A0A0G2JS06 123 aa12.52□□□□□ -0.41
CLN3-206ENST00000360019 J3QQQ9 107 aa12.52□□□□□ -0.41
CLN3-206ENST00000360019 UBE2DNLQ8IWF7 75 aa12.52□□□□□ -0.41
CLN3-206ENST00000360019 MIAQ16674 131 aa12.51□□□□□ -0.41
CLN3-206ENST00000360019 WWC2-AS2Q96NR7 200 aa12.51□□□□□ -0.41
CLN3-206ENST00000360019 DLEU1O43261 78 aa12.51□□□□□ -0.41
CLN3-206ENST00000360019 TRAV8-4A0A0B4J246 113 aa12.5□□□□□ -0.41
CLN3-206ENST00000360019 FOXI1Q12951 378 aa12.5□□□□□ -0.41
CLN3-206ENST00000360019 PLEKHB2Q96CS7 222 aa12.5□□□□□ -0.41
CLN3-206ENST00000360019 DNAH2Q9P225 4427 aa12.49□□□□□ -0.41
CLN3-206ENST00000360019 GAGE12HA6NDE8 117 aa12.49□□□□□ -0.41
CLN3-206ENST00000360019 KMT2AQ03164 3969 aa12.49□□□□□ -0.41
CLN3-206ENST00000360019 MYMXA0A1B0GTQ4 84 aa12.48□□□□□ -0.41
CLN3-206ENST00000360019 LGALS3P17931 250 aaKnown RBP12.48□□□□□ -0.41
CLN3-206ENST00000360019 C2orf91Q6ZV80 131 aa12.48□□□□□ -0.41
CLN3-206ENST00000360019 IBA57-AS1B1ANH7 110 aa12.48□□□□□ -0.41
CLN3-206ENST00000360019 KRTAP26-1Q6PEX3 210 aa12.48□□□□□ -0.41
CLN3-206ENST00000360019 ALMS1Q8TCU4 4167 aa12.48□□□□□ -0.41
CLN3-206ENST00000360019 ZNF815PA8K554 130 aa12.47□□□□□ -0.41
CLN3-206ENST00000360019 COX7A2LO14548 114 aa12.47□□□□□ -0.41
CLN3-206ENST00000360019 HNRNPA3P51991 378 aaKnown RBP12.47□□□□□ -0.41
CLN3-206ENST00000360019 DNAH6Q9C0G6 4158 aa12.47□□□□□ -0.41
CLN3-206ENST00000360019 LINC01561Q8N1V8 128 aa12.46□□□□□ -0.42
CLN3-206ENST00000360019 C10orf126Q8N4M7 172 aa12.46□□□□□ -0.42
CLN3-206ENST00000360019 KRTAP1-5Q9BYS1 174 aa12.46□□□□□ -0.42
CLN3-206ENST00000360019 Q9HAA7 133 aa12.46□□□□□ -0.42
CLN3-206ENST00000360019 LINC00587B1AMM8 73 aa12.45□□□□□ -0.42
CLN3-206ENST00000360019 C1orf43Q9BWL3 253 aa12.44□□□□□ -0.42
CLN3-206ENST00000360019 IGKV2D-24A0A075B6R9 120 aa12.43□□□□□ -0.42
CLN3-206ENST00000360019 NDUFA12Q9UI09 145 aa12.43□□□□□ -0.42
CLN3-206ENST00000360019 K7EP13 123 aa12.42□□□□□ -0.42
CLN3-206ENST00000360019 MALP21145 153 aa12.42□□□□□ -0.42
CLN3-206ENST00000360019 CTAG1AP78358 180 aa12.42□□□□□ -0.42
CLN3-206ENST00000360019 COX7B2Q8TF08 81 aa12.42□□□□□ -0.42
CLN3-206ENST00000360019 TOMM7Q9P0U1 55 aa12.42□□□□□ -0.42
CLN3-206ENST00000360019 SACSQ9NZJ4 4579 aa12.41□□□□□ -0.42
CLN3-206ENST00000360019 CASC10Q5T4H9 136 aa12.41□□□□□ -0.42
CLN3-206ENST00000360019 NDUFA1O15239 70 aa12.4□□□□□ -0.42
CLN3-206ENST00000360019 ZNF625Q96I27 306 aaPredicted RBP12.4□□□□□ -0.42
CLN3-206ENST00000360019 HIGD1BQ9P298 99 aa12.4□□□□□ -0.42
CLN3-206ENST00000360019 SCGB1D4Q6XE38 83 aa12.39□□□□□ -0.43
CLN3-206ENST00000360019 ORAOV1Q8WV07 137 aa12.39□□□□□ -0.43
CLN3-206ENST00000360019 A0A0J9YXY3 114 aa12.38□□□□□ -0.43
CLN3-206ENST00000360019 KIAA0087Q14695 138 aa12.38□□□□□ -0.43
CLN3-206ENST00000360019 Q8IZM0 81 aa12.38□□□□□ -0.43
CLN3-206ENST00000360019 HYDINQ4G0P3 5121 aa12.37□□□□□ -0.43
CLN3-206ENST00000360019 NBDYA0A0U1RRE5 68 aa12.37□□□□□ -0.43
CLN3-206ENST00000360019 APOMO95445 188 aa12.37□□□□□ -0.43
CLN3-206ENST00000360019 C6orf226Q5I0X4 101 aa12.36□□□□□ -0.43
CLN3-206ENST00000360019 C3orf84H3BNL1 204 aa12.35□□□□□ -0.43
CLN3-206ENST00000360019 PRSS2P07478 247 aa12.35□□□□□ -0.43
CLN3-206ENST00000360019 RMI2Q96E14 147 aa12.35□□□□□ -0.43
CLN3-206ENST00000360019 C15orf56Q8N910 161 aa12.34□□□□□ -0.43
CLN3-206ENST00000360019 SPAG11BQ08648 103 aa12.34□□□□□ -0.43
CLN3-206ENST00000360019 TTC32Q5I0X7 151 aa12.34□□□□□ -0.43
CLN3-206ENST00000360019 C2orf82Q6UX34 121 aa12.34□□□□□ -0.43
CLN3-206ENST00000360019 DNAH17Q9UFH2 4485 aa12.34□□□□□ -0.43
CLN3-206ENST00000360019 LITAFQ99732 161 aa12.33□□□□□ -0.44
CLN3-206ENST00000360019 HERV-K104P63124 156 aa12.32□□□□□ -0.44
CLN3-206ENST00000360019 LINC00526Q96FQ7 95 aa12.32□□□□□ -0.44
CLN3-206ENST00000360019 HINT1P49773 126 aaPredicted RBP12.32□□□□□ -0.44
CLN3-206ENST00000360019 HSD52Q0P140 79 aa12.32□□□□□ -0.44
CLN3-206ENST00000360019 CFAP161Q6P656 301 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms