RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 LINC00959A0A1B0GUT2 108 aa11.41□□□□□ -0.58
PTPRF-201ENST00000359947 IGLV5-52A0A0A0MRZ9 124 aa11.41□□□□□ -0.58
PTPRF-201ENST00000359947 H3BT86 120 aa11.4□□□□□ -0.58
PTPRF-201ENST00000359947 RNASE3P12724 160 aaKnown RBP11.4□□□□□ -0.58
PTPRF-201ENST00000359947 ZNF295-AS1Q8N0V1 137 aa11.4□□□□□ -0.58
PTPRF-201ENST00000359947 Q8N6K4 173 aa11.4□□□□□ -0.58
PTPRF-201ENST00000359947 ZNF706Q9Y5V0 76 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-201ENST00000359947 C3orf22Q8N5N4 141 aa11.4□□□□□ -0.59
PTPRF-201ENST00000359947 IGLV2-11P01706 119 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 TP73-AS1Q9UF72 201 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 MYO9AB2RTY4 2548 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 ENHOQ6UWT2 76 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 RNF185Q96GF1 192 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 MRGPRG-AS1Q2M3A8 158 aa11.39□□□□□ -0.59
PTPRF-201ENST00000359947 CIRBP-AS1Q8TBR5 109 aa11.38□□□□□ -0.59
PTPRF-201ENST00000359947 TRBV6-5A0A0K0K1A5 114 aa11.38□□□□□ -0.59
PTPRF-201ENST00000359947 AGRNO00468 2067 aa11.38□□□□□ -0.59
PTPRF-201ENST00000359947 TSHBP01222 138 aa11.38□□□□□ -0.59
PTPRF-201ENST00000359947 Q6ZTC4 211 aa11.38□□□□□ -0.59
PTPRF-201ENST00000359947 WFDC13Q8IUB5 93 aa11.37□□□□□ -0.59
PTPRF-201ENST00000359947 LRP4O75096 1905 aa11.37□□□□□ -0.59
PTPRF-201ENST00000359947 NDUFA7O95182 113 aa11.37□□□□□ -0.59
PTPRF-201ENST00000359947 C20orf197Q8N268 126 aa11.37□□□□□ -0.59
PTPRF-201ENST00000359947 U3KQK5 164 aa11.36□□□□□ -0.59
PTPRF-201ENST00000359947 M0R378 163 aa11.36□□□□□ -0.59
PTPRF-201ENST00000359947 SPATA12Q7Z6I5 190 aa11.36□□□□□ -0.59
PTPRF-201ENST00000359947 MAPKAPK5-AS1Q8N8E1 139 aa11.35□□□□□ -0.59
PTPRF-201ENST00000359947 C11orf21Q9P2W6 132 aa11.35□□□□□ -0.59
PTPRF-201ENST00000359947 LINC00643Q86TS7 51 aa11.35□□□□□ -0.59
PTPRF-201ENST00000359947 Q6ZQY7 126 aa11.34□□□□□ -0.59
PTPRF-201ENST00000359947 MBD6Q96DN6 1003 aa11.34□□□□□ -0.59
PTPRF-201ENST00000359947 LINC00474Q9P2X8 69 aa11.34□□□□□ -0.59
PTPRF-201ENST00000359947 K7ERS5 55 aa11.34□□□□□ -0.59
PTPRF-201ENST00000359947 M0QXV9 152 aa11.34□□□□□ -0.59
PTPRF-201ENST00000359947 FN1P02751 2386 aaKnown RBP11.33□□□□□ -0.6
PTPRF-201ENST00000359947 CYSRT1A8MQ03 144 aa11.33□□□□□ -0.6
PTPRF-201ENST00000359947 TRIAP1O43715 76 aa11.33□□□□□ -0.6
PTPRF-201ENST00000359947 ODF3L2Q3SX64 289 aa11.33□□□□□ -0.6
PTPRF-201ENST00000359947 MRPL55Q7Z7F7 128 aaKnown RBP11.33□□□□□ -0.6
PTPRF-201ENST00000359947 C9orf116Q5BN46 136 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-201ENST00000359947 NDUFV3P56181 108 aaKnown RBP11.32□□□□□ -0.6
PTPRF-201ENST00000359947 PTPRSQ13332 1948 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 C6orf223Q8N319 242 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 TLN2Q9Y4G6 2542 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 TRBV27A0A0K0K1C4 114 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 KLLNB2CW77 178 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 DHRS4-AS1Q9P1J3 65 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 A0A1W2PPR1 153 aa11.32□□□□□ -0.6
PTPRF-201ENST00000359947 ABCA12Q86UK0 2595 aa11.31□□□□□ -0.6
PTPRF-201ENST00000359947 GOLGB1Q14789 3259 aaKnown RBP11.31□□□□□ -0.6
PTPRF-201ENST00000359947 RETNLBQ9BQ08 111 aa11.31□□□□□ -0.6
PTPRF-201ENST00000359947 GAS8-AS1O95177 125 aa11.31□□□□□ -0.6
PTPRF-201ENST00000359947 MT-ATP8P03928 68 aa11.3□□□□□ -0.6
PTPRF-201ENST00000359947 ADAMTS20P59510 1910 aa11.3□□□□□ -0.6
PTPRF-201ENST00000359947 UNQ6190/PRO20217Q6UXQ8 127 aa11.29□□□□□ -0.6
PTPRF-201ENST00000359947 NRACQ8N912 160 aa11.29□□□□□ -0.6
PTPRF-201ENST00000359947 FAM236DA0A1B0GTK5 79 aa11.29□□□□□ -0.6
PTPRF-201ENST00000359947 FAM236CP0DP71 79 aa11.29□□□□□ -0.6
PTPRF-201ENST00000359947 LINC01556Q5JQF7 62 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 C1orf134Q5TEV5 83 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 MUC22E2RYF6 1773 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-201ENST00000359947 CENPFP49454 3210 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 CRIP2P52943 208 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-201ENST00000359947 IGLV1-51P01701 117 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 SMIM11BQ8TCY0 68 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 C10orf25Q5T742 122 aa11.28□□□□□ -0.6
PTPRF-201ENST00000359947 TLN1Q9Y490 2541 aaKnown RBP11.27□□□□□ -0.6
PTPRF-201ENST00000359947 CPAMD8Q8IZJ3 1885 aa11.27□□□□□ -0.61
PTPRF-201ENST00000359947 ZNF73O43830 326 aaPredicted RBP11.27□□□□□ -0.61
PTPRF-201ENST00000359947 PRR4Q16378 134 aa11.27□□□□□ -0.61
PTPRF-201ENST00000359947 C1orf137Q5JT78 98 aa11.27□□□□□ -0.61
PTPRF-201ENST00000359947 FSHBP01225 129 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 PYGO1Q9Y3Y4 419 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 FAM240AA0A1B0GVK7 77 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 ZNF462Q96JM2 2506 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 UQCRQO14949 82 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 NDUFC2-KCTD14E9PQ53 114 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 RPL28P46779 137 aaKnown RBP11.26□□□□□ -0.61
PTPRF-201ENST00000359947 CDC42SE2Q9NRR3 84 aa11.26□□□□□ -0.61
PTPRF-201ENST00000359947 X6R8D5 127 aa11.25□□□□□ -0.61
PTPRF-201ENST00000359947 PRR3P79522 188 aaKnown RBP11.24□□□□□ -0.61
PTPRF-201ENST00000359947 POM121L12Q8N7R1 296 aa11.24□□□□□ -0.61
PTPRF-201ENST00000359947 PRR15LQ9BU68 103 aa11.24□□□□□ -0.61
PTPRF-201ENST00000359947 SNURFQ9Y675 71 aa11.23□□□□□ -0.61
PTPRF-201ENST00000359947 FAM30AQ9NZY2 134 aa11.23□□□□□ -0.61
PTPRF-201ENST00000359947 REG3GQ6UW15 175 aa11.22□□□□□ -0.61
PTPRF-201ENST00000359947 COX6A2Q02221 97 aa11.22□□□□□ -0.61
PTPRF-201ENST00000359947 IGLV4-60A0A075B6I1 120 aa11.22□□□□□ -0.61
PTPRF-201ENST00000359947 A6NED7 52 aa11.22□□□□□ -0.61
PTPRF-201ENST00000359947 Q6ZVQ6 151 aa11.22□□□□□ -0.61
PTPRF-201ENST00000359947 COX17Q14061 63 aa11.21□□□□□ -0.61
PTPRF-201ENST00000359947 Q8IZM0 81 aa11.21□□□□□ -0.62
PTPRF-201ENST00000359947 C16orf95Q9H693 158 aa11.2□□□□□ -0.62
PTPRF-201ENST00000359947 SETD2Q9BYW2 2564 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-201ENST00000359947 MRPS36P82909 103 aaKnown RBP11.2□□□□□ -0.62
PTPRF-201ENST00000359947 FHL2Q14192 279 aa11.19□□□□□ -0.62
PTPRF-201ENST00000359947 POLR2KP53803 58 aaKnown RBP11.19□□□□□ -0.62
PTPRF-201ENST00000359947 TRBV30A0A0K0K1B3 111 aa11.18□□□□□ -0.62
PTPRF-201ENST00000359947 V9GYY9 64 aa11.18□□□□□ -0.62
PTPRF-201ENST00000359947 LINC00694P0DN24 101 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms