RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RPL28P46779 137 aaKnown RBP12.67□□□□□ -0.38
SYNPO-201ENST00000307662 ATG2AQ2TAZ0 1938 aa12.67□□□□□ -0.38
SYNPO-201ENST00000307662 A0A087WVE0 104 aa12.66□□□□□ -0.38
SYNPO-201ENST00000307662 ZNF73O43830 326 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-201ENST00000307662 LINC00242Q5T6M2 205 aa12.66□□□□□ -0.38
SYNPO-201ENST00000307662 IGHV4-31P0DP07 118 aa12.66□□□□□ -0.38
SYNPO-201ENST00000307662 MUC7Q8TAX7 377 aa12.65□□□□□ -0.38
SYNPO-201ENST00000307662 FAM30AQ9NZY2 134 aa12.65□□□□□ -0.38
SYNPO-201ENST00000307662 HIVEP2P31629 2446 aa12.65□□□□□ -0.38
SYNPO-201ENST00000307662 KLK5Q9Y337 293 aaPredicted RBP12.65□□□□□ -0.38
SYNPO-201ENST00000307662 A0A0J9YWU9 116 aa12.65□□□□□ -0.38
SYNPO-201ENST00000307662 TANC2Q9HCD6 1990 aa12.65□□□□□ -0.39
SYNPO-201ENST00000307662 Q6ZSV7 163 aa12.65□□□□□ -0.39
SYNPO-201ENST00000307662 KIR2DL5BQ8NHK3 375 aa12.65□□□□□ -0.39
SYNPO-201ENST00000307662 A0A087WZ39 114 aa12.64□□□□□ -0.39
SYNPO-201ENST00000307662 IGLV1-40P01703 118 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 PRM2P04554 102 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 MRGPRG-AS1Q2M3A8 158 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 SMIM1B2RUZ4 78 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 COX8CQ7Z4L0 72 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 DEFB131BA0A096LNP1 70 aa12.63□□□□□ -0.39
SYNPO-201ENST00000307662 Q8N814 137 aa12.62□□□□□ -0.39
SYNPO-201ENST00000307662 CEP192Q8TEP8 1941 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 K7ERS5 55 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 ADAMTSL4-AS1Q5T5F5 129 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 WNK1Q9H4A3 2382 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 A0A087WYN8 130 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 ZNF702PQ9H963 129 aa12.61□□□□□ -0.39
SYNPO-201ENST00000307662 IGLV2-18A0A075B6J9 118 aa12.6□□□□□ -0.39
SYNPO-201ENST00000307662 ATRXP46100 2492 aa12.6□□□□□ -0.39
SYNPO-201ENST00000307662 LINC00482Q8N8I6 264 aa12.6□□□□□ -0.39
SYNPO-201ENST00000307662 Q8N9L7 120 aa12.6□□□□□ -0.39
SYNPO-201ENST00000307662 LELP1Q5T871 98 aa12.59□□□□□ -0.39
SYNPO-201ENST00000307662 CHCHD7Q9BUK0 85 aa12.59□□□□□ -0.39
SYNPO-201ENST00000307662 SOSTDC1Q6X4U4 206 aa12.58□□□□□ -0.4
SYNPO-201ENST00000307662 CELA1Q9UNI1 258 aa12.58□□□□□ -0.4
SYNPO-201ENST00000307662 AMELXQ99217 191 aa12.58□□□□□ -0.4
SYNPO-201ENST00000307662 CDIP1Q9H305 208 aa12.58□□□□□ -0.4
SYNPO-201ENST00000307662 COX6A2Q02221 97 aa12.57□□□□□ -0.4
SYNPO-201ENST00000307662 DSCAMO60469 2012 aa12.57□□□□□ -0.4
SYNPO-201ENST00000307662 CYSRT1A8MQ03 144 aa12.55□□□□□ -0.4
SYNPO-201ENST00000307662 PRYO14603 147 aa12.55□□□□□ -0.4
SYNPO-201ENST00000307662 ZNF580Q9UK33 172 aa12.55□□□□□ -0.4
SYNPO-201ENST00000307662 PPDPFQ9H3Y8 114 aa12.54□□□□□ -0.4
SYNPO-201ENST00000307662 C18orf65Q6ZTR6 163 aa12.54□□□□□ -0.4
SYNPO-201ENST00000307662 HILS1P60008 231 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 LRCOL1A6NCL2 159 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 RPL37AP8A6NKH3 93 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 WFDC10AQ9H1F0 79 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 LRP4O75096 1905 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 EML5Q05BV3 1969 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 PTPN13Q12923 2485 aa12.53□□□□□ -0.4
SYNPO-201ENST00000307662 CSDC2Q9Y534 153 aaKnown RBP12.53□□□□□ -0.4
SYNPO-201ENST00000307662 Q8N3U1 123 aa12.52□□□□□ -0.41
SYNPO-201ENST00000307662 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.52□□□□□ -0.41
SYNPO-201ENST00000307662 TRBV7-7A0A0K0K1E9 115 aa12.52□□□□□ -0.41
SYNPO-201ENST00000307662 LOC107984640A0A0U1RRK4 108 aa12.51□□□□□ -0.41
SYNPO-201ENST00000307662 PMAIP1Q13794 54 aa12.51□□□□□ -0.41
SYNPO-201ENST00000307662 ARHGAP32A7KAX9 2087 aa12.51□□□□□ -0.41
SYNPO-201ENST00000307662 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-201ENST00000307662 UNQ6190/PRO20217Q6UXQ8 127 aa12.5□□□□□ -0.41
SYNPO-201ENST00000307662 KPRPQ5T749 579 aaPredicted RBP12.5□□□□□ -0.41
SYNPO-201ENST00000307662 SONP18583 2426 aaKnown RBP12.49□□□□□ -0.41
SYNPO-201ENST00000307662 TRBV10-3A0A0K0K1G6 114 aa12.49□□□□□ -0.41
SYNPO-201ENST00000307662 EDN2P20800 178 aa12.49□□□□□ -0.41
SYNPO-201ENST00000307662 ZNF843Q8N446 348 aa12.49□□□□□ -0.41
SYNPO-201ENST00000307662 NAV2Q8IVL1 2488 aa12.49□□□□□ -0.41
SYNPO-201ENST00000307662 PTPRSQ13332 1948 aa12.48□□□□□ -0.41
SYNPO-201ENST00000307662 NAV3Q8IVL0 2385 aa12.48□□□□□ -0.41
SYNPO-201ENST00000307662 ZNF706Q9Y5V0 76 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-201ENST00000307662 EP400Q96L91 3159 aa12.48□□□□□ -0.41
SYNPO-201ENST00000307662 PRR3P79522 188 aaKnown RBP12.47□□□□□ -0.41
SYNPO-201ENST00000307662 LINC00208Q96KT6 92 aa12.47□□□□□ -0.41
SYNPO-201ENST00000307662 C9orf116Q5BN46 136 aaPredicted RBP12.47□□□□□ -0.41
SYNPO-201ENST00000307662 SPINK6Q6UWN8 80 aa12.47□□□□□ -0.41
SYNPO-201ENST00000307662 LINC00846Q9NV44 126 aa12.47□□□□□ -0.41
SYNPO-201ENST00000307662 C1orf137Q5JT78 98 aa12.47□□□□□ -0.41
SYNPO-201ENST00000307662 IL17DQ8TAD2 202 aa12.47□□□□□ -0.41
SYNPO-201ENST00000307662 EGFEM1PQ0D2K5 195 aa12.46□□□□□ -0.42
SYNPO-201ENST00000307662 IGLV4-60A0A075B6I1 120 aa12.45□□□□□ -0.42
SYNPO-201ENST00000307662 SRCAPQ6ZRS2 3230 aa12.45□□□□□ -0.42
SYNPO-201ENST00000307662 TRAV10A0A0B4J240 114 aa12.45□□□□□ -0.42
SYNPO-201ENST00000307662 LINC01546A6NGU7 62 aa12.44□□□□□ -0.42
SYNPO-201ENST00000307662 CDSNQ15517 529 aa12.44□□□□□ -0.42
SYNPO-201ENST00000307662 ODF3L2Q3SX64 289 aa12.44□□□□□ -0.42
SYNPO-201ENST00000307662 LINC01006Q8NI28 216 aa12.43□□□□□ -0.42
SYNPO-201ENST00000307662 SORL1Q92673 2214 aa12.43□□□□□ -0.42
SYNPO-201ENST00000307662 TMEM254Q8TBM7 123 aa12.42□□□□□ -0.42
SYNPO-201ENST00000307662 NCOR2Q9Y618 2525 aa12.42□□□□□ -0.42
SYNPO-201ENST00000307662 NANOS2P60321 138 aaKnown RBP12.42□□□□□ -0.42
SYNPO-201ENST00000307662 Q6ZVQ6 151 aa12.42□□□□□ -0.42
SYNPO-201ENST00000307662 IGF2RP11717 2491 aa12.42□□□□□ -0.42
SYNPO-201ENST00000307662 PIEZO2Q9H5I5 2752 aa12.41□□□□□ -0.42
SYNPO-201ENST00000307662 C10orf25Q5T742 122 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 PSPHP1O15172 72 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 PIEZO1Q92508 2521 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 PLAC8L1A1L4L8 177 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 LINC00575Q6W349 94 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 IGLV9-49A0A0B4J1Y8 123 aa12.4□□□□□ -0.42
SYNPO-201ENST00000307662 IGHV4-30-4P0DP06 118 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms