RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 EXPH5Q8NEV8 1989 aa12.57□□□□□ -0.4
SHANK1-201ENST00000293441 UBE2D2P62837 147 aa12.57□□□□□ -0.4
SHANK1-201ENST00000293441 MRPS36P82909 103 aaKnown RBP12.57□□□□□ -0.4
SHANK1-201ENST00000293441 CPAMD8Q8IZJ3 1885 aa12.57□□□□□ -0.4
SHANK1-201ENST00000293441 TRBV30A0A0K0K1B3 111 aa12.57□□□□□ -0.4
SHANK1-201ENST00000293441 Q6ZQY7 126 aa12.56□□□□□ -0.4
SHANK1-201ENST00000293441 COL5A1P20908 1838 aaPredicted RBP12.56□□□□□ -0.4
SHANK1-201ENST00000293441 J3KT08 172 aa12.55□□□□□ -0.4
SHANK1-201ENST00000293441 LINC00474Q9P2X8 69 aa12.55□□□□□ -0.4
SHANK1-201ENST00000293441 SRCAPQ6ZRS2 3230 aa12.55□□□□□ -0.4
SHANK1-201ENST00000293441 NDUFC2O95298 119 aa12.55□□□□□ -0.4
SHANK1-201ENST00000293441 SMIM11BQ8TCY0 68 aa12.55□□□□□ -0.4
SHANK1-201ENST00000293441 POLR2KP53803 58 aaKnown RBP12.54□□□□□ -0.4
SHANK1-201ENST00000293441 CDC42SE2Q9NRR3 84 aa12.54□□□□□ -0.4
SHANK1-201ENST00000293441 TIMM17BO60830 172 aa12.54□□□□□ -0.4
SHANK1-201ENST00000293441 CYSRT1A8MQ03 144 aa12.53□□□□□ -0.4
SHANK1-201ENST00000293441 C20orf197Q8N268 126 aa12.53□□□□□ -0.4
SHANK1-201ENST00000293441 A0A1W2PPR1 153 aa12.53□□□□□ -0.4
SHANK1-201ENST00000293441 IGLV1-51P01701 117 aa12.53□□□□□ -0.4
SHANK1-201ENST00000293441 COX17Q14061 63 aa12.53□□□□□ -0.4
SHANK1-201ENST00000293441 EML5Q05BV3 1969 aa12.52□□□□□ -0.4
SHANK1-201ENST00000293441 WFDC13Q8IUB5 93 aa12.51□□□□□ -0.41
SHANK1-201ENST00000293441 C10orf142B7Z368 130 aa12.51□□□□□ -0.41
SHANK1-201ENST00000293441 Q8IZM0 81 aa12.51□□□□□ -0.41
SHANK1-201ENST00000293441 C3orf22Q8N5N4 141 aa12.51□□□□□ -0.41
SHANK1-201ENST00000293441 Q6ZTC4 211 aa12.5□□□□□ -0.41
SHANK1-201ENST00000293441 MT-ATP8P03928 68 aa12.5□□□□□ -0.41
SHANK1-201ENST00000293441 ADAMTS20P59510 1910 aa12.5□□□□□ -0.41
SHANK1-201ENST00000293441 M0QXV9 152 aa12.49□□□□□ -0.41
SHANK1-201ENST00000293441 ZNF73O43830 326 aaPredicted RBP12.49□□□□□ -0.41
SHANK1-201ENST00000293441 C16orf95Q9H693 158 aa12.49□□□□□ -0.41
SHANK1-201ENST00000293441 NAV3Q8IVL0 2385 aa12.49□□□□□ -0.41
SHANK1-201ENST00000293441 CRIP2P52943 208 aaPredicted RBP12.49□□□□□ -0.41
SHANK1-201ENST00000293441 MPLKIPQ8TAP9 179 aa12.49□□□□□ -0.41
SHANK1-201ENST00000293441 ATP5EP2Q5VTU8 51 aa12.48□□□□□ -0.41
SHANK1-201ENST00000293441 IGLV5-52A0A0A0MRZ9 124 aa12.48□□□□□ -0.41
SHANK1-201ENST00000293441 SVIPQ8NHG7 77 aa12.48□□□□□ -0.41
SHANK1-201ENST00000293441 UNQ6190/PRO20217Q6UXQ8 127 aa12.47□□□□□ -0.41
SHANK1-201ENST00000293441 POM121L12Q8N7R1 296 aa12.47□□□□□ -0.41
SHANK1-201ENST00000293441 C9orf116Q5BN46 136 aaPredicted RBP12.47□□□□□ -0.41
SHANK1-201ENST00000293441 ATRXP46100 2492 aa12.47□□□□□ -0.41
SHANK1-201ENST00000293441 MRPS12O15235 138 aaKnown RBP12.47□□□□□ -0.41
SHANK1-201ENST00000293441 YPEL4Q96NS1 127 aa12.46□□□□□ -0.42
SHANK1-201ENST00000293441 C6orf223Q8N319 242 aa12.45□□□□□ -0.42
SHANK1-201ENST00000293441 NDUFV3P56181 108 aaKnown RBP12.45□□□□□ -0.42
SHANK1-201ENST00000293441 C10orf25Q5T742 122 aa12.45□□□□□ -0.42
SHANK1-201ENST00000293441 BRK1Q8WUW1 75 aa12.45□□□□□ -0.42
SHANK1-201ENST00000293441 SPTSSBQ8NFR3 76 aa12.44□□□□□ -0.42
SHANK1-201ENST00000293441 FHL2Q14192 279 aa12.44□□□□□ -0.42
SHANK1-201ENST00000293441 COX6A2Q02221 97 aa12.43□□□□□ -0.42
SHANK1-201ENST00000293441 CIRBP-AS1Q8TBR5 109 aa12.43□□□□□ -0.42
SHANK1-201ENST00000293441 IGLV4-60A0A075B6I1 120 aa12.43□□□□□ -0.42
SHANK1-201ENST00000293441 CACNA1AO00555 2505 aa12.43□□□□□ -0.42
SHANK1-201ENST00000293441 LINC00242Q5T6M2 205 aa12.43□□□□□ -0.42
SHANK1-201ENST00000293441 RPL28P46779 137 aaKnown RBP12.42□□□□□ -0.42
SHANK1-201ENST00000293441 IGIPA6NJ69 53 aa12.42□□□□□ -0.42
SHANK1-201ENST00000293441 CNFNQ9BYD5 112 aa12.41□□□□□ -0.42
SHANK1-201ENST00000293441 NAV2Q8IVL1 2488 aa12.41□□□□□ -0.42
SHANK1-201ENST00000293441 LST1O00453 97 aa12.41□□□□□ -0.42
SHANK1-201ENST00000293441 REG3GQ6UW15 175 aa12.41□□□□□ -0.42
SHANK1-201ENST00000293441 C2orf91Q6ZV80 131 aa12.41□□□□□ -0.42
SHANK1-201ENST00000293441 FAM236DA0A1B0GTK5 79 aa12.4□□□□□ -0.42
SHANK1-201ENST00000293441 LINC00694P0DN24 101 aa12.4□□□□□ -0.42
SHANK1-201ENST00000293441 FAM236CP0DP71 79 aa12.4□□□□□ -0.42
SHANK1-201ENST00000293441 CHCHD7Q9BUK0 85 aa12.4□□□□□ -0.42
SHANK1-201ENST00000293441 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.4□□□□□ -0.42
SHANK1-201ENST00000293441 CCDC168Q8NDH2 2452 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 EP400Q96L91 3159 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 UQCRQO14949 82 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 EGFEM1PQ0D2K5 195 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 FAM30AQ9NZY2 134 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 PIEZO2Q9H5I5 2752 aa12.39□□□□□ -0.43
SHANK1-201ENST00000293441 SNURFQ9Y675 71 aa12.38□□□□□ -0.43
SHANK1-201ENST00000293441 K7ERS5 55 aa12.38□□□□□ -0.43
SHANK1-201ENST00000293441 TET2Q6N021 2002 aaPredicted RBP12.38□□□□□ -0.43
SHANK1-201ENST00000293441 PRR3P79522 188 aaKnown RBP12.37□□□□□ -0.43
SHANK1-201ENST00000293441 MUC7Q8TAX7 377 aa12.37□□□□□ -0.43
SHANK1-201ENST00000293441 TRBV10-3A0A0K0K1G6 114 aa12.37□□□□□ -0.43
SHANK1-201ENST00000293441 SMIM1B2RUZ4 78 aa12.37□□□□□ -0.43
SHANK1-201ENST00000293441 LINC01556Q5JQF7 62 aa12.36□□□□□ -0.43
SHANK1-201ENST00000293441 C1orf134Q5TEV5 83 aa12.36□□□□□ -0.43
SHANK1-201ENST00000293441 IGF2RP11717 2491 aa12.36□□□□□ -0.43
SHANK1-201ENST00000293441 PRR4Q16378 134 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 Q6ZSN1 163 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 FAM19A3Q7Z5A8 133 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 PRR15LQ9BU68 103 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 C1orf137Q5JT78 98 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 NCOR2Q9Y618 2525 aa12.34□□□□□ -0.43
SHANK1-201ENST00000293441 ABCA2Q9BZC7 2435 aa12.33□□□□□ -0.43
SHANK1-201ENST00000293441 LYPD5Q6UWN5 251 aa12.32□□□□□ -0.44
SHANK1-201ENST00000293441 Q8N9L7 120 aa12.32□□□□□ -0.44
SHANK1-201ENST00000293441 AGRNO00468 2067 aa12.31□□□□□ -0.44
SHANK1-201ENST00000293441 ESRGQ1W209 222 aa12.3□□□□□ -0.44
SHANK1-201ENST00000293441 Q8N814 137 aa12.29□□□□□ -0.44
SHANK1-201ENST00000293441 ZNF580Q9UK33 172 aa12.29□□□□□ -0.44
SHANK1-201ENST00000293441 SERP1Q9Y6X1 66 aa12.29□□□□□ -0.44
SHANK1-201ENST00000293441 NDUFC2-KCTD14E9PQ53 114 aa12.28□□□□□ -0.44
SHANK1-201ENST00000293441 NTM-AS1Q6ZSK4 140 aa12.28□□□□□ -0.44
SHANK1-201ENST00000293441 RETNLBQ9BQ08 111 aa12.28□□□□□ -0.44
SHANK1-201ENST00000293441 Q6ZVQ6 151 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms